pandas~=2.2.3
numpy~=1.26.4
mdanalysis~=2.7.0
python-dotenv~=1.0.1
matplotlib~=3.10.1
seaborn~=0.13.2
h5py~=3.13.0
scikit-learn~=1.5.0
scipy~=1.15.2
transformers~=4.51.3
datasets~=3.2.0
biopython~=1.83
blosum~=2.0.3
fair-esm~=2.0.0
evodiff~=1.1.0
sequence-models~=1.8.0
pdb-tools~=2.5.0
wandb~=0.16.6
tqdm~=4.67.1
ijson~=3.3.0
pyfastx~=2.2.0
huggingface_hub~=0.34.4
azure-identity~=1.21.0
