LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
sarand/__init__.py
sarand/__main__.py
sarand/annotation.py
sarand/config.py
sarand/coverage.py
sarand/databases.py
sarand/extract_neighborhood.py
sarand/pipeline.py
sarand/target_finder.py
sarand.egg-info/PKG-INFO
sarand.egg-info/SOURCES.txt
sarand.egg-info/dependency_links.txt
sarand.egg-info/entry_points.txt
sarand.egg-info/requires.txt
sarand.egg-info/top_level.txt
sarand/data/CARD_AMR_seq.fasta
sarand/data/NCBI_AMR_seq.fasta
sarand/data/versions.json
sarand/external/__init__.py
sarand/external/bandage.py
sarand/external/blastn.py
sarand/external/cdhit.py
sarand/external/minimap2.py
sarand/model/__init__.py
sarand/model/fasta_seq.py
sarand/util/__init__.py
sarand/util/annotate.py
sarand/util/cli.py
sarand/util/file.py
sarand/util/graph_path.py
sarand/util/logger.py
sarand/util/naming.py
sarand/util/pkg.py
sarand/util/sequence.py