Metadata-Version: 1.1
Name: amas
Version: 0.2
Summary: Calculate various summary statistics on a multiple sequence alignment
Home-page: https://github.com/marekborowiec/AMAS
Author: Marek Borowiec
Author-email: petiolus@gmail.com
License: GNU PL v3
Description: # AMAS
        Calculate various summary statistics on a multiple sequence alignment
        
        ## Usage
        AMAS can be run from the command line:
        
        ```shell
        python AMAS.py <input_file> <format> <alphabet>
        ```
        The supported formats are `fasta`, `phylip`, `nexus`, `phylip-int`, and `nexus-int`. The alphabets are `aa` or `dna`.
        
        Also, AMAS can be imported from other Python modules:
        
        ```python
        >>> from amas import AMAS
        
        >>> in_file = 'fasta1.fas'
        >>> in_format = 'fasta'
        >>> data_type = 'dna'
        >>> aln = AMAS.DNAAlignment(in_file, in_format, data_type)
        >>> aln.summarize_alignment()
        ['fasta1.fas', '10', '100', '1000', '1', '0.1', '2', '0.02', '1', '0.01']
        ```
        
Keywords: amas
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.3
