LICENSE
README.md
setup.py
bpnet/__init__.py
bpnet.egg-info/PKG-INFO
bpnet.egg-info/SOURCES.txt
bpnet.egg-info/dependency_links.txt
bpnet.egg-info/entry_points.txt
bpnet.egg-info/not-zip-safe
bpnet.egg-info/requires.txt
bpnet.egg-info/top_level.txt
bpnet/cli/__init__.py
bpnet/cli/argparsers.py
bpnet/cli/bpnettrainer.py
bpnet/cli/counts_loss_weight.py
bpnet/cli/embeddings.py
bpnet/cli/motif_discovery.py
bpnet/cli/outliers.py
bpnet/cli/predict.py
bpnet/cli/shap_scores.py
bpnet/cli/gc/__init__.py
bpnet/cli/gc/get_foreground_gc_content.py
bpnet/cli/gc/get_gc_background.py
bpnet/cli/gc/get_gc_matched_negatives.py
bpnet/cli/gc/get_genomewide_gc_bins.py
bpnet/generators/__init__.py
bpnet/generators/generators.py
bpnet/generators/sequtils.py
bpnet/model/__init__.py
bpnet/model/arch.py
bpnet/model/bpnetdefaults.py
bpnet/model/custommodel.py
bpnet/model/losses.py
bpnet/train/__init__.py
bpnet/train/training.py
bpnet/utils/__init__.py
bpnet/utils/bigwig_helper.py
bpnet/utils/counts_loss_weight.py
bpnet/utils/datetime_custom.py
bpnet/utils/exceptionhandler.py
bpnet/utils/importance_hdf5_to_bigwig.py
bpnet/utils/logger.py
bpnet/utils/mean_predictions.py
bpnet/utils/mean_shap.py
bpnet/utils/misc.py
bpnet/utils/shaputils.py
test/__init__.py
test/test_generators.py
test/test_sequtils.py