Metadata-Version: 1.1
Name: aimhii
Version: 0.5.4
Summary: A pipeline for mapping insertion mutants from whole genome shotgun data
Home-page: http://granek.bitbucket.org/projects/aimhii/
Author: Josh Granek
Author-email: joshua.granek@duke.edu
License: The MIT License (MIT)
Description: AIMHII
        =======================
        
        This package provides software for identifying the genome insertion points random mutants generated by insertional mutagenesis, which have been sequenced as a pool.
        
        The package will install two executables: aimhii and extract_chimeras.
        
        aimhii will run a full analysis starting from sequence data (a FASTQ file), genome sequence, and insert sequence.  extract_chimeras just runs the last step of this analysis, assuming you already have a BAM file and a concatenated genome-insert sequence.
        
        For details see the project website http://granek.bitbucket.org/projects/aimhii/
        
        
        
        Changes in v0.5.4: Added --plot option to aimhii and shifted a few remaining "prints" to logging
        
        Changes in v0.5.3: Shifted debugging prints to logging and added scripts for generating synthetic sequences
        
        Changes in v0.5.2: Lowered pysam version requirement to allow installation using apt-get in Debian v8.
        
        Changes in v0.5.1: Fixed problem with missing DESCRIPTION.rst.
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
