## htsjdk.samtools.metrics.StringHeader
# CollectWgsMetrics --INPUT /data_local/6/3A_WT_WGBS_chr2_17k_R1.bam --OUTPUT 3A_WT_WGBS_chr2_17k_R1_wgs_metrics.txt --MINIMUM_MAPPING_QUALITY 20 --MINIMUM_BASE_QUALITY 20 --COVERAGE_CAP 250 --LOCUS_ACCUMULATION_CAP 100000 --INCLUDE_BQ_HISTOGRAM false --COUNT_UNPAIRED false --SAMPLE_SIZE 10000 --READ_LENGTH 150 --VALIDATION_STRINGENCY STRICT --REFERENCE_SEQUENCE /data_local/1/hg19_chr2 17k.fasta --STOP_AFTER -1 --ALLELE_FRACTION 0.001 --ALLELE_FRACTION 0.005 --ALLELE_FRACTION 0.01 --ALLELE_FRACTION 0.02 --ALLELE_FRACTION 0.05 --ALLELE_FRACTION 0.1 --ALLELE_FRACTION 0.2 --ALLELE_FRACTION 0.3 --ALLELE_FRACTION 0.5 --USE_FAST_ALGORITHM false --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Thu Feb 10 17:31:45 UTC 2022

## METRICS CLASS	CollectWgsMetrics$WgsMetrics
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_ADAPTER	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	FOLD_80_BASE_PENALTY	FOLD_90_BASE_PENALTY	FOLD_95_BASE_PENALTY	HET_SNP_SENSITIVITY	HET_SNP_Q
6950	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	?	?	?	0	0

## HISTOGRAM	java.lang.Integer
coverage	high_quality_coverage_count
0	6950
1	0
2	0
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246	0
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248	0
249	0
250	0

