COMMAND: samtools markdup -r -s -d 100 -f markdup_stats.txt coordinate_sorted.bam markdup_removed.bam
READ: 2173739
WRITTEN: 2170783
EXCLUDED: 189325
EXAMINED: 1984414
PAIRED: 1978896
SINGLE: 5518
DUPLICATE PAIR: 2626
DUPLICATE SINGLE: 330
DUPLICATE PAIR OPTICAL: 40
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 2956
DUPLICATE TOTAL: 2956
ESTIMATED_LIBRARY_SIZE: 378249905