Metadata-Version: 2.1
Name: bio2bel-mirtarbase
Version: 0.2.2
Summary: A package for converting miRTarBase to BEL
Home-page: https://github.com/bio2bel/mirtarbase
Author: Charles Tapley Hoyt and Colin Birkenbihl
Author-email: charles.hoyt@scai.fraunhofer.de
Maintainer: Charles Tapley Hoyt and Colin Birkenbihl
Maintainer-email: charles.hoyt@scai.fraunhofer.de
License: MIT License
Description: Bio2BEL miRTarBase |build| |coverage| |documentation| |zenodo|
        ==============================================================
        Serializes text-mined miRNA-target interactions to BEL
        
        Installation |pypi_version| |python_versions| |pypi_license|
        ------------------------------------------------------------
        ``bio2bel_mirtarbase`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_mirtarbase>`_ with the
        following code in your favorite terminal:
        
        .. code-block:: sh
        
            $ python3 -m pip install bio2bel_mirtarbase
        
        or from the latest code on `GitHub <https://github.com/bio2bel/mirtarbase>`_ with:
        
        .. code-block:: sh
        
            $ python3 -m pip install git+https://github.com/bio2bel/mirtarbase.git@master
        
        Setup
        -----
        miRTarBase can be downloaded and populated from either the Python REPL or the automatically installed command line
        utility.
        
        Python REPL
        ~~~~~~~~~~~
        .. code-block:: python
        
            >>> import bio2bel_mirtarbase
            >>> mirtarbase_manager = bio2bel_mirtarbase.Manager()
            >>> mirtarbase_manager.populate()
        
        Command Line Utility
        ~~~~~~~~~~~~~~~~~~~~
        .. code-block:: bash
        
            bio2bel_mirtarbase populate
        
        Citations
        ---------
        - Chih-Hung Chou, et al; miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database.
          Nucleic Acids Res 2016; 44 (D1): D239-D247. doi: 10.1093/nar/gkv1258
        
        Links
        -----
        - http://mirtarbase.mbc.nctu.edu.tw/
        
        .. |build| image:: https://travis-ci.org/bio2bel/mirtarbase.svg?branch=master
            :target: https://travis-ci.org/bio2bel/mirtarbase
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/mirtarbase/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/mirtarbase?branch=master
            :alt: Coverage Status
        
        .. |documentation| image:: https://readthedocs.org/projects/mirtarbase/badge/?version=latest
            :target: http://mirtarbase.readthedocs.io
            :alt: Documentation Status
        
        .. |climate| image:: https://codeclimate.com/github/bio2bel/mirtarbase/badges/gpa.svg
            :target: https://codeclimate.com/github/bio2bel/mirtarbase
            :alt: Code Climate
        
        .. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_mirtarbase.svg
            :alt: Stable Supported Python Versions
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_mirtarbase.svg
            :alt: Current version on PyPI
        
        .. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_mirtarbase.svg
            :alt: MIT License
        
        .. |zenodo| image:: https://zenodo.org/badge/95350968.svg
            :target: https://zenodo.org/badge/latestdoi/95350968
            :alt: Zenodo DOI
        
Keywords: Biological Expression Language,Micro-RNA,Systems Biology,Networks Biology
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Provides-Extra: docs
Provides-Extra: web
