.gitignore
LICENSE
README.md
pyproject.toml
requirements.txt
setup.py
bin/convert2fasta.py
bin/fasta2secenergy.py
bin/peartofasta.py
bin/runner.py
demos/advanced.py
demos/basic.py
demos/design_sequences.txt
dt4dds/__init__.py
dt4dds/properties.py
dt4dds.egg-info/PKG-INFO
dt4dds.egg-info/SOURCES.txt
dt4dds.egg-info/dependency_links.txt
dt4dds.egg-info/requires.txt
dt4dds.egg-info/top_level.txt
dt4dds/analysis/__init__.py
dt4dds/analysis/alignment.py
dt4dds/analysis/analysis.py
dt4dds/analysis/errormapper.py
dt4dds/analysis/fileio.py
dt4dds/analysis/mapping.py
dt4dds/analysis/phix.fasta
dt4dds/datastructures/__init__.py
dt4dds/datastructures/seq.py
dt4dds/datastructures/seqpool.py
dt4dds/helpers/__init__.py
dt4dds/helpers/config.py
dt4dds/helpers/errorgenerator.py
dt4dds/helpers/generators.py
dt4dds/helpers/logging.py
dt4dds/helpers/step.py
dt4dds/helpers/tools.py
dt4dds/processes/__init__.py
dt4dds/processes/aging.py
dt4dds/processes/array_synthesis.py
dt4dds/processes/dilution.py
dt4dds/processes/pcr.py
dt4dds/processes/purification.py
dt4dds/processes/sbs_sequencing.py
dt4dds/settings/__init__.py
dt4dds/settings/array_synthesis_customarray.yaml
dt4dds/settings/array_synthesis_customarray_GCall.yaml
dt4dds/settings/array_synthesis_customarray_GCfix.yaml
dt4dds/settings/array_synthesis_twist.yaml
dt4dds/settings/defaults.py
dt4dds/settings/fixed_aging.yaml
dt4dds/settings/iseq100.yaml
dt4dds/settings/pcr_Q5.yaml
dt4dds/settings/pcr_exo.yaml
dt4dds/settings/pcr_hifi.yaml
dt4dds/settings/pcr_taq.yaml
dt4dds/settings/properties.yaml
dt4dds/settings/settings.py
scripts/bunny_generations/design_files.fasta
scripts/bunny_generations/main.py
scripts/extreme_cases/best.py
scripts/extreme_cases/design_files.fasta
scripts/extreme_cases/experiments.py
scripts/extreme_cases/worst.py
scripts/internal_validation/Genscript_GCall/Aging.py
scripts/internal_validation/Genscript_GCall/PCR.py
scripts/internal_validation/Genscript_GCall/design_files.fasta
scripts/internal_validation/Genscript_GCfix/Aging.py
scripts/internal_validation/Genscript_GCfix/PCR.py
scripts/internal_validation/Genscript_GCfix/design_files.fasta
scripts/internal_validation/Twist_GCall/Aging.py
scripts/internal_validation/Twist_GCall/PCR.py
scripts/internal_validation/Twist_GCall/design_files.fasta
scripts/internal_validation/Twist_GCfix/Aging.py
scripts/internal_validation/Twist_GCfix/PCR.py
scripts/internal_validation/Twist_GCfix/design_files.fasta