Metadata-Version: 2.1
Name: cada-prio
Version: 0.2.1
Summary: Phenotype-based prioritization of variants with CADA
Home-page: https://github.com/bihealth/cada-prio
Author: Manuel Holtgrewe
Author-email: manuel.holtgrewe@bih-charite.de
License: MIT license
Keywords: cada
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: AUTHORS.rst

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# CADA: The Next Generation

This is a re-implementation of the [CADA](https://github.com/Chengyao-Peng/CADA) method for phenotype-similarity prioritization.

- Free software: MIT license
- Documentation: https://cada-prio.readthedocs.io/en/latest/
- Discussion Forum: https://github.com/bihealth/cada-prio/discussions
- Bug Reports: https://github.com/bihealth/cada-prio/issues


## Managing GitHub Project with Terraform

```
# export GITHUB_OWNER=bihealth
# export GITHUB_TOKEN=ghp_<thetoken>

# cd utils/terraform

# terraform init
# terraform import github_repository.cada-prio cada-prio
# terraform validate
# terraform fmt
# terraform plan
# terraform apply
```


# Changelog

### [0.2.1](https://www.github.com/bihealth/cada-prio/compare/v0.2.0...v0.2.1) (2023-09-08)


### Bug Fixes

* removing spurious debug print statement ([#7](https://www.github.com/bihealth/cada-prio/issues/7)) ([98e7443](https://www.github.com/bihealth/cada-prio/commit/98e74433001872517a4904bbe85fd021cc4ad613))

## [0.2.0](https://www.github.com/bihealth/cada-prio/compare/v0.1.0...v0.2.0) (2023-09-08)


### Features

* gene to phenotype links file can be gziped ([#5](https://www.github.com/bihealth/cada-prio/issues/5)) ([66c48bf](https://www.github.com/bihealth/cada-prio/commit/66c48bf98c8bd73f8227c7cbd5687b4e74577ef8))

## 0.1.0 (2023-09-07)


### Features

* adding REST API server for prediction ([#4](https://www.github.com/bihealth/cada-prio/issues/4)) ([8bb7516](https://www.github.com/bihealth/cada-prio/commit/8bb75161097529932f371925fe860290098f0885))
* initial training implementation ([#1](https://www.github.com/bihealth/cada-prio/issues/1)) ([10d3a7c](https://www.github.com/bihealth/cada-prio/commit/10d3a7cb356b50a89fd8b1226ad66932dd5542f3))
* prioritization prediction with model ([#3](https://www.github.com/bihealth/cada-prio/issues/3)) ([48d504c](https://www.github.com/bihealth/cada-prio/commit/48d504c0bc373e1ae312773fa70a5a2e04d8dbed))
