Metadata-Version: 2.1
Name: RSeQC
Version: 5.0.4
Summary: QC package for RNA-seq data.
Author-email: Liguo Wang <wangliguo78@gmail.com>, Shengqin Wang <wzsqwang@gmail.com>, Wei Li <superliwei@gmail.com>
Maintainer-email: Liguo Wang <wangliguo78@gmail.com>
License: {{ RSeQC }}
        Copyright (C) {{ 2024 }}  {{ Mayo Clinic }}
        
        This program is free software: you can redistribute it and/or modify
        it under the terms of the GNU General Public License as published by
        the Free Software Foundation, either version 3 of the License, or
        (at your option) any later version.
        
        This program is distributed in the hope that it will be useful,
        but WITHOUT ANY WARRANTY; without even the implied warranty of
        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
        GNU General Public License for more details.
        
        You should have received a copy of the GNU General Public License
        along with this program.  If not, see <http://www.gnu.org/licenses/>.
        
Project-URL: Documentation, http://rseqc.sourceforge.net/
Keywords: RNA-seq,QC
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: GNU General Public License v2 (GPLv2)
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.5
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pysam
Requires-Dist: bx-python
Requires-Dist: numpy
Requires-Dist: pyBigWig
Requires-Dist: logomaker

# Install RSeQC using [pip](https://pip.pypa.io/en/stable/)

### Check if [pip](https://pip.pypa.io/en/stable/) is available

`pip` is a package manager that allows users to install and manage Python packages. It comes with Python 3.4 and later versions.
 
 `pip --version`
 
 `pip 24.2 from /XXX/YYY/lib/python3.11/site-packages/pip (python 3.11)`

 If you see any errors, following this [instructions](https://pypi.org/project/pip/) to install `pip`.

### (Optional) Create Virtual Environments (Note: `venv` is available in Python 3.3 and later. You can also use [virtualenv](https://packaging.python.org/en/latest/key_projects/#virtualenv))

 `$ python3 -m venv my_env` (will create a directory called my_env)

 `$ source my_env/bin/activate`

### Install

 `$ pip install rseqc`

### Upgrade

 `$ pip install rseqc --upgrade`

### Uninstall

 `pip -y uninstall rseqc`

# Documentation

http://rseqc.sourceforge.net/
