pandas>=2.0
numpy>=1.26
scipy>=1.11
scikit-learn>=1.3
biopython>=1.84
torch>=2.1
transformers>=4.36
tokenizers>=0.15
fair-esm>=2.0.0
biotite>=1.0
matplotlib>=3.8
seaborn>=0.13
openpyxl>=3.1
requests>=2.31
tqdm>=4.66
pyyaml>=6.0
certifi
xgboost>=2.0
pyreadr>=0.5

[dev]
pytest>=7.0
pytest-cov>=4.0

[gpu]
accelerate>=0.25

[structural]
torch-geometric>=2.4
