Metadata-Version: 2.0
Name: datalad-neuroimaging
Version: 0.1.2
Summary: DataLad extension package for neuro/medical imaging
Home-page: UNKNOWN
Author: The DataLad Team and Contributors
Author-email: team@datalad.org
License: UNKNOWN
Description-Content-Type: UNKNOWN
Platform: UNKNOWN
Requires-Dist: datalad[full] (>=0.10.0.rc1)
Requires-Dist: pydicom
Requires-Dist: pybids[analysis] (>=0.5.1)
Requires-Dist: nibabel
Requires-Dist: pandas
Provides-Extra: devel-docs
Requires-Dist: pypandoc; extra == 'devel-docs'
Requires-Dist: sphinx; extra == 'devel-docs'
Requires-Dist: sphinx-rtd-theme; extra == 'devel-docs'

::

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    |  _ \   __ _ | |_   __ _ | |      __ _   __| |
    | | | | / _` || __| / _` || |     / _` | / _` |
    | |_| || (_| || |_ | (_| || |___ | (_| || (_| |
    |____/  \__,_| \__| \__,_||_____| \__,_| \__,_|
                                       Neuroimaging

|Travis tests status| |codecov.io| |Documentation|
|https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg|
|License: MIT| |GitHub release| |PyPI version fury.io| |Average time to
resolve an issue| |Percentage of issues still open|

This extension enhances DataLad (http://datalad.org) for working with
neuroimaging data and workflows. Please see the `extension
documentation <http://datalad-neuroimaging.rtfd.org>`__ for a
description on additional commands and functionality.

For general information on how to use or contribute to DataLad (and this
extension), please see the `DataLad website <http://datalad.org>`__ or
the `main GitHub project page <http://datalad.org>`__.

Installation
------------

Before you install this package, please make sure that you `install a
recent version of
git-annex <https://git-annex.branchable.com/install>`__. Afterwards,
install the latest version of ``datalad-neuroimaging`` from
`PyPi <https://pypi.org/project/datalad-neuroimaging>`__. It is
recommended to use a dedicated
`virtualenv <https://virtualenv.pypa.io>`__:

::

    # create and enter a new virtual environment (optional)
    virtualenv --system-site-packages --python=python3 ~/env/dataladni
    . ~/env/dataladni/bin/activate

    # install from PyPi
    pip install datalad_neuroimaging

There is also a `Singularity container <http://singularity.lbl.gov>`__
available. The latest release version can be obtained by running:

::

    singularity pull shub://datalad/datalad-neuroimaging

Acknowledgements
----------------

DataLad development is supported by a US-German collaboration in
computational neuroscience (CRCNS) project "DataGit: converging
catalogues, warehouses, and deployment logistics into a federated 'data
distribution'" (Halchenko/Hanke), co-funded by the US National Science
Foundation (NSF 1429999) and the German Federal Ministry of Education
and Research (BMBF 01GQ1411). Additional support is provided by the
German federal state of Saxony-Anhalt and the European Regional
Development Fund (ERDF), Project: Center for Behavioral Brain Sciences,
Imaging Platform

.. |Travis tests status| image:: https://secure.travis-ci.org/datalad/datalad-neuroimaging.png?branch=master
   :target: https://travis-ci.org/datalad/datalad-neuroimaging
.. |codecov.io| image:: https://codecov.io/github/datalad/datalad-neuroimaging/coverage.svg?branch=master
   :target: https://codecov.io/github/datalad/datalad-neuroimaging?branch=master
.. |Documentation| image:: https://readthedocs.org/projects/datalad-neuroimaging/badge/?version=latest
   :target: http://datalad-neuroimaging.rtfd.org
.. |https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg| image:: https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg
   :target: https://singularity-hub.org/collections/841
.. |License: MIT| image:: https://img.shields.io/badge/License-MIT-yellow.svg
   :target: https://opensource.org/licenses/MIT
.. |GitHub release| image:: https://img.shields.io/github/release/datalad/datalad-neuroimaging.svg
   :target: https://GitHub.com/datalad/datalad-neuroimaging/releases/
.. |PyPI version fury.io| image:: https://badge.fury.io/py/datalad-neuroimaging.svg
   :target: https://pypi.python.org/pypi/datalad-neuroimaging/
.. |Average time to resolve an issue| image:: http://isitmaintained.com/badge/resolution/datalad/datalad-neuroimaging.svg
   :target: http://isitmaintained.com/project/datalad/datalad-neuroimaging
.. |Percentage of issues still open| image:: http://isitmaintained.com/badge/open/datalad/datalad-neuroimaging.svg
   :target: http://isitmaintained.com/project/datalad/datalad-neuroimaging


