pggt/__init__.py,sha256=tEz8tLsP3RLuz-JqA3rgxczmVrCvIeEPX5GH_MPLpu0,67
pggt/cli.py,sha256=cj4lB8Nqas4HEzGhN9yTiCOlYbQFHrpZ_I4_N7sl3xo,970
pggt/workflow/__init__.py,sha256=Ns9Hbwj6617tcbjDnjBc_o8rRDqwtL1vQFP8Ggqx5I4,41
pggt/workflow/run_PGGT.sh,sha256=syBqJlwuPZxT9noXgLxumUY6vBmHyAtBJ3Q2GUY_Qvs,39793
pggt/workflow/validate_pipeline_tables.py,sha256=6wF-wMobvJdh1ijFBixR5I2DVuQXIKJBzdvKks4ceRw,3691
pggt/workflow/lib/__init__.py,sha256=N8iGJw3wTyb7MW_xErFwD6lFrQXRCyayQoPQNEvy4Ik,50
pggt/workflow/lib/artifacts.sh,sha256=RQr_OY9YGm027cJgqt6RqOy0IOmsVm70phJD_0tHRaA,2347
pggt/workflow/lib/miniprot_cache.sh,sha256=iAg5J58ANX2VMkjDPB_idLNUgC-ymveIkcaNbQWlEwc,2559
pggt/workflow/modules/__init__.py,sha256=ByROadxpWOud2sf2ZRN7hk5TJ1POidkU58pRG3vkI3k,30
pggt/workflow/modules/allele_cnv_pav/__init__.py,sha256=t1iX4RUkYzT76E5jQU-ffiApOg4KmlSasYKBY75YXtU,45
pggt/workflow/modules/allele_cnv_pav/build_allele_cnv_pav_table.py,sha256=AjFU-EhbfgIjCtaa42rIeyQUNup_Ku1WxdFmV-E4qAc,8154
pggt/workflow/modules/allele_cnv_pav/make_w_gfa_from_allele_table.py,sha256=oDDbpzGb6ocpVVuYCva0UbaisZDxI3e3Yz7IKo4KSoE,15216
pggt/workflow/modules/allele_cnv_pav/run_allele_cnv_pav_module.sh,sha256=ALKEs6b24aUQW8enn8kPRCsod-P5s7LYYZ9gcN_fGjM,3767
pggt/workflow/modules/component_filter/01_parse_component_table.py,sha256=fxId9WO7x-70Joh-c1vPaGYujLCd2Cn6PIlolhIS6dQ,3412
pggt/workflow/modules/component_filter/02_extract_longest_proteins_and_structure.py,sha256=FO3e16Iw7p8c78LIP4V8rCh4gZ4Ybi_NTZgk2L0o1a0,13544
pggt/workflow/modules/component_filter/03_filter_diamond_hits_to_component_pairs.py,sha256=LIYtBwIeUX8w-khwSrBRtNH1bg86M1idOBuT62cc8r8,4615
pggt/workflow/modules/component_filter/04_score_and_filter_edges.py,sha256=62rTNqnQZeONUpChwWk0lvxhs2Zcdj4yq9zRIUOVTHg,11167
pggt/workflow/modules/component_filter/05_build_filtered_component_table.py,sha256=HJkeJ60yZPAvoV_nXyC8hXvDBl4myewjwSQLuxscWzE,6881
pggt/workflow/modules/component_filter/06_summarize_filter_result.py,sha256=10OmfuAXyjqBqV_TClwiGdKRHsQvy6x8kwgN9gLDqbQ,3193
pggt/workflow/modules/component_filter/__init__.py,sha256=Y27IgiQKl3oc4wj3X3Zjx5bWRUA9adkOg9j3pWwZWlk,45
pggt/workflow/modules/component_filter/run_diamond_structure_filter.sh,sha256=H56V0S9bxzNnZ1DES5FwYsqp3hsvPianLDUHsSToTZA,7585
pggt/workflow/modules/graph/2.segment-pos-threaded-lowmem.py,sha256=XvHOxpf8oly4DWoPT8x8Ad7jvC5ubmaJ5iHCXHGu9hA,12058
pggt/workflow/modules/graph/3.gene-segment-pos-by-coordinate.py,sha256=glWSGdwQo_4OKSLMh93fs_vD-0qtblesjzcxBL48TPg,1664
pggt/workflow/modules/graph/4.query-segment-find-ref-segment.strict.py,sha256=UVAHOl5g-kIsnkObiM9unt3dsRWr1pblB-XSD7tB18w,5526
pggt/workflow/modules/graph/__init__.py,sha256=sY9DmrorO7idgKqylPMa8mpbulhEVfrNC6jENCpBuks,42
pggt/workflow/modules/graph/build_noref_gene_components.py,sha256=cF50NarS7pcYjvvpGMoiijGG3hBScG-8sPYEBmELAyY,10241
pggt/workflow/modules/graph/fast_extract_w_segments_and_s_parallel.py,sha256=K0pJmHYkwbEBcM4FVXRTLa1qzH3J1iYA48vRTRyy8FE,3739
pggt/workflow/modules/graph/run_graph_mapping_allgenome_noref.sh,sha256=b8YYnFKUBzKA0e07tQM5BL4IGm7eGUPGJ6h2Wn90NAs,15187
pggt/workflow/modules/singleton_cnv/__init__.py,sha256=8n9ai35gjc_Z1KAAAliwKFxNlPvQKPzLmMzDB7nS82I,39
pggt/workflow/modules/singleton_cnv/annotate_singleton_orthogroup_v4.py,sha256=er8x4AJ3qCtdONlBA0OFhkltsKuwrQM43nBiey2XQ20,7898
pggt/workflow/modules/singleton_cnv/build_singleton_joint_evidence_v4.py,sha256=hWpirqxJ18THuo2OsU_s7uWOeq5Jt-u8HTsgObLZznA,32349
pggt/workflow/modules/singleton_cnv/build_singleton_orthogroup_table_v2.py,sha256=FWPBfEiwEirqeJwHhjO-_3D2mNrm9P-RGzQI5GBum-Y,5404
pggt/workflow/modules/singleton_cnv/build_singleton_orthogroup_table_v3.py,sha256=qTJBzIk59kc43x-_tx7IohO-lp5QY2c15qaHFYwhP_A,40510
pggt/workflow/modules/singleton_cnv/prepare_singleton_cnv_input.py,sha256=eTHPCd9hON3Q2cWGmd2zNzhiZrchVDY0zb2fvoxZprQ,4875
pggt/workflow/modules/singleton_cnv/prepare_singleton_miniprot_queries_v4.py,sha256=ZImXh_VsH1Ku2KpM4FvUesdfOrCAkj6m3srPWx4nZmw,2818
pggt/workflow/modules/singleton_cnv/run_singleton_orthogroup_miniprot_pfam_v5.sh,sha256=IKtd-rw_xuuFF9y2ot0-FEbtWJkLmq_XytbNbITS5VM,15271
pggt/workflow/modules/singleton_score/__init__.py,sha256=ccTxktWEIstyDIKcOvw2fC1DqyrJwMut6Z0iGwOntC4,43
pggt/workflow/modules/singleton_score/run_singleton_score_v2.sh,sha256=Uog9EkBIZDANdQ2UalcymOzIWC6WdfV8fIl0jDwad8M,4069
pggt/workflow/modules/singleton_score/singleton_score_pipeline.py,sha256=u7c8lhpO_U0qsxRCXmYFfn5ZcJvM_reZp2Zci6zh1QE,45387
pggt-1.0.0.dist-info/METADATA,sha256=Fvl52iwyDCMRdY61G0dmnh7j9LmJtBeh6wz3lR6xFv0,8042
pggt-1.0.0.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
pggt-1.0.0.dist-info/entry_points.txt,sha256=_sOAtlJWPS4a4vKwc-Kyn0NekFUw5oydVSw8Upn5P_4,76
pggt-1.0.0.dist-info/top_level.txt,sha256=I5a6d4XwBez2iGsRmjpIlzoAO-fZ4Hm7UV_3VdMxFis,5
pggt-1.0.0.dist-info/RECORD,,
