Metadata-Version: 2.1
Name: MOODS-python
Version: 1.9.4.1
Summary: MOODS: Motif Occurrence Detection Suite
Home-page: https://www.cs.helsinki.fi/group/pssmfind/
Maintainer: Janne H. Korhonen
Maintainer-email: janne.h.korhonen@gmail.com
License: GPLv3 / Biopython license
Description: MOODS-python 1.9.4.1
        ====================
        
        Motif Occurrence Detection Suite
        
        https://www.cs.helsinki.fi/group/pssmfind/
        
        
        Installing from PyPi
        --------------------
        
        The quickest way to install MOODS is using pip:
        
        (a) Install the module to your local Python library path:
        
            pip install --user MOODS-python
        
        (b) Install the module for all users:
        
            sudo pip install MOODS-python
        
        Installing the MOODS package from PyPi installs the `moods-dna.py` script to
        your Python executable directory. Test it by running:
        
            moods-dna.py --help
        
        (Note that this assumes that the appropriate Python executable directory is in
        your path. For example, if you install the package with --user, you can do this
        with
        
            PATH="$PATH:`python -m site --user-base`/bin"
        
        if it doesn't work otherwise.)
        
        
        Installing from Source
        ----------------------
        
        Alternatively, you can install MOODS from the source package, for example if you
        don't have your pip configured or you just want a quick throwaway install.
        
        (a) If you don't want to bother installing MOODS, you can compile the extensions
            in place and create a symlink under `scripts/`:
        
            python setup.py build_ext --inplace
            cd scripts
            ln -s ../MOODS/
        
        (b) Install the module to your local Python library path:
        
            python setup.py install --user
        
        (c) Install the module for all users:
        
            sudo python setup.py install
        
        You can test MOODS by running the `moods-dna.py` script with
        the example data provided with the package:
        
            cd scripts/
            python moods-dna.py -m example-data/matrices/*.{pfm,adm} -s example-data/seq/chr1-5k-55k.fa -p 0.0001
            python moods-dna.py --help
        
        
        Documentation
        -------------
        
        Documentation on GitHub wiki: https://github.com/jhkorhonen/MOODS/wiki
        
        
        Copyright and Licence
        ---------------------
        
        Copyright (C) 2009 by Petri J Martinmäki, Janne Korhonen, Pasi Rastas
        
        This program is free software: you can redistribute it and/or modify
        it under the terms of the GNU General Public License as published by
        the Free Software Foundation, either version 3 of the License, or
        (at your option) any later version, or under the terms of the Biopython
        License.
        
Keywords: PWM,PSSM,motif scan
Platform: UNKNOWN
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
