LICENSE
README.md
setup.py
IGLoo/IGLoo.py
IGLoo/IGLoo_ReAsm.py
IGLoo/IGLoo_ReAsm2.py
IGLoo/IGLoo_asm.py
IGLoo/IGLoo_read.py
IGLoo/__init__.py
IGLoo/materials/IGH_all_genes.txt
IGLoo/materials/IGH_chm13_extend.bed
IGLoo/materials/IGH_functional.txt
IGLoo/materials/IGH_grch37.bed
IGLoo/materials/IGH_grch37_extend.bed
IGLoo/materials/IGH_grch38.bed
IGLoo/materials/IGH_grch38_extend.bed
IGLoo/materials/IGH_grch38_plusOrphon.bed
IGLoo/materials/IGK_grch37.bed
IGLoo/materials/IGK_grch37_extend.bed
IGLoo/materials/IGK_grch38.bed
IGLoo/materials/IGK_grch38_extend.bed
IGLoo/materials/IGL_grch37.bed
IGLoo/materials/IGL_grch37_extend.bed
IGLoo/materials/IGL_grch38.bed
IGLoo/materials/IGL_grch38_extend.bed
IGLoo/materials/bedtool_slop.sh
IGLoo/materials/gene_annotations/chm13_IGH.bed
IGLoo/materials/gene_annotations/franken_1st.bed
IGLoo/materials/gene_annotations/franken_1st.fa
IGLoo/materials/gene_annotations/gene_coords.IGH.bed
IGLoo/materials/gene_annotations/gene_coords.bed
IGLoo/materials/gene_annotations/hg19_IGH.bed
IGLoo/materials/gene_annotations/igh.fasta
IGLoo/materials/gene_annotations/GRCh38/grch38_IGH.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_IGH_alt.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_IGK.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_IGL.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_IG_orphon.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_IG_orphon_alt.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_TRAD.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_TRB.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_TRB_alt.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_TRG.bed
IGLoo/materials/gene_annotations/GRCh38/grch38_TR_orphon.bed
IGLoo/materials/personalized_ref/referece_base.fa
IGLoo/materials/personalized_ref/referece_del.fa
IGLoo/scripts/__init__.py
IGLoo/scripts/analyze_pacbio_refs.py
IGLoo/scripts/collect_IGH_from_chm13.sh
IGLoo/scripts/collect_IGH_from_grch38.sh
IGLoo/scripts/contig_gene_table.py
IGLoo/scripts/count_gene_and_allele.py
IGLoo/scripts/enrich_DJ_read.py
IGLoo/scripts/find_coverage_region.py
IGLoo/scripts/find_upperCase.py
IGLoo/scripts/force_polish.py
IGLoo/scripts/ig_SV_typing.py
IGLoo/scripts/mask_case_n_depth.py
IGLoo/scripts/mask_reassembly.py
IGLoo/scripts/merge_haplotypes.py
IGLoo/scripts/merge_personal_ref_2hap.py
IGLoo/scripts/plot_asm.py
IGLoo/scripts/plot_events.py
IGLoo/scripts/separate_reads.py
IGLoo/scripts/split_read_from_yak.py
IGLoo/scripts/utils.py
bio_IGLoo.egg-info/PKG-INFO
bio_IGLoo.egg-info/SOURCES.txt
bio_IGLoo.egg-info/dependency_links.txt
bio_IGLoo.egg-info/entry_points.txt
bio_IGLoo.egg-info/not-zip-safe
bio_IGLoo.egg-info/requires.txt
bio_IGLoo.egg-info/top_level.txt