numpy<2.0.0,>1.24.0
pandas<3.0.0,>=2.0.0
tqdm<5.0.0,>=4.0.0
tables<4.0.0,>=3.0.0
pyrodigal<4.0.0,>=3.0.0
networkx<4.0.0,>=3.0.0
scipy<2.0.0,>=1.0.0
plotly<6.0.0,>=5.0.0
gmpy2<3.0.0,>=2.0.0
bokeh<4.0.0,>=3.0.0

[doc]
sphinx==6.2.1
sphinx_rtd_theme==1.2.2
readthedocs-sphinx-search==0.3.2
sphinx-autobuild==2021.3.14
myst-parser==2
docutils==0.18.1
sphinxcontrib.mermaid==0.9.2

[test]
pytest==7
black==24.*
