.gitignore
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE.rst
README.rst
pyproject.toml
.github/dependabot.yml
.github/run_examples.py
.github/run_unitests.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/help.md
.github/ISSUE_TEMPLATE/installation_issue.md
.github/workflows/documentation.yml
.github/workflows/pep8.yml
.github/workflows/testing.yml
brainprep/__init__.py
brainprep/color_utils.py
brainprep/connectivity.py
brainprep/cortical.py
brainprep/deface.py
brainprep/info.py
brainprep/plotting.py
brainprep/qc.py
brainprep/spatial.py
brainprep/tbss.py
brainprep/utils.py
brainprep.egg-info/PKG-INFO
brainprep.egg-info/SOURCES.txt
brainprep.egg-info/dependency_links.txt
brainprep.egg-info/requires.txt
brainprep.egg-info/top_level.txt
brainprep/resources/MNI152_T1_1mm_brain.nii.gz
brainprep/resources/cat12vbm_matlabbatch.m
brainprep/resources/cat12vbm_matlabbatch_longitudinal.m
brainprep/scripts/brainprep
brainprep/tests/test_preprocessing.py
brainprep/workflow/__init__.py
brainprep/workflow/cat12vbm.py
brainprep/workflow/deface.py
brainprep/workflow/fmriprep.py
brainprep/workflow/fsreconall.py
brainprep/workflow/mriqc.py
brainprep/workflow/prequal.py
brainprep/workflow/quasiraw.py
brainprep/workflow/tbss.py
brainprep/workflow/resources/iqm_T1w.csv
brainprep/workflow/resources/iqm_T2w.csv
brainprep/workflow/resources/iqm_bold.csv
brainprep/workflow/resources/iqm_desc.csv
brainprep/workflow/resources/iqm_select.tsv
containers/Dockerfile.anat
containers/Dockerfile.dmriprep
containers/Dockerfile.fmriprep
containers/Dockerfile.mriqc
containers/Singularity.dmriprep
containers/generate_images.py
doc/source/conf.py
doc/source/_static/brainprep.png
doc/source/_static/carousel/cat12.png
doc/source/_static/carousel/fmriprep.png
doc/source/_static/carousel/freesurfer.png
doc/source/_static/carousel/mriqc.png
doc/source/_static/carousel/quasiraw.jpg
examples/README.txt
examples/plot_cat12vbm.py
examples/plot_fmriprep.py
examples/plot_fsreconall.py
examples/plot_mriqc.py
examples/plot_quasiraw.py