.travis.yml
LICENSE
MANIFEST.in
README.md
appveyor.yml
bld_test_linux.sh
lgtm.yml
pyproject.toml
setup.cfg
setup.py
winmake.bat
ImageD11/ImageD11_file_series.py
ImageD11/ImageD11_thread.py
ImageD11/ImageD11options.py
ImageD11/__init__.py
ImageD11/blobcorrector.py
ImageD11/cImageD11.py
ImageD11/cImageD11_docstrings.py
ImageD11/columnfile.py
ImageD11/compute_fazit.py
ImageD11/correct.py
ImageD11/fetch_data.py
ImageD11/fft_index_refac.py
ImageD11/finite_strain.py
ImageD11/frelon_peaksearch.py
ImageD11/grain.py
ImageD11/grid_index_parallel.py
ImageD11/guicommand.py
ImageD11/gv_general.py
ImageD11/indexing.py
ImageD11/labelimage.py
ImageD11/lattice_reduction.py
ImageD11/license.py
ImageD11/parameters.py
ImageD11/peakmerge.py
ImageD11/peaksearcher.py
ImageD11/peakselect.py
ImageD11/rc_array.py
ImageD11/refinegrains.py
ImageD11/rotdex.py
ImageD11/rsv.py
ImageD11/rsv_mapper.py
ImageD11/saintraw.py
ImageD11/scale.py
ImageD11/simplex.py
ImageD11/sparseframe.py
ImageD11/stress.py
ImageD11/sym_u.py
ImageD11/symops.py
ImageD11/transform.py
ImageD11/transformer.py
ImageD11/unitcell.py
ImageD11/weighted_kde.py
ImageD11/write_graindex_gv.py
ImageD11.egg-info/PKG-INFO
ImageD11.egg-info/SOURCES.txt
ImageD11.egg-info/dependency_links.txt
ImageD11.egg-info/requires.txt
ImageD11.egg-info/top_level.txt
ImageD11/depreciated/GE_script.py
ImageD11/depreciated/ImageD11Server.py
ImageD11/depreciated/__init__.py
ImageD11/depreciated/data.py
ImageD11/depreciated/eps_sig_solver.py
ImageD11/depreciated/fft_index.py
ImageD11/depreciated/filterout.py
ImageD11/depreciated/findreflections.py
ImageD11/depreciated/fitgrainxy.py
ImageD11/depreciated/guifactors.py
ImageD11/depreciated/hist.c
ImageD11/depreciated/hist.py
ImageD11/depreciated/linearity.py
ImageD11/depreciated/mar2bruker.py
ImageD11/depreciated/marccd.py
ImageD11/depreciated/opendata.py
ImageD11/depreciated/peaklabel.py
ImageD11/depreciated/pread.py
ImageD11/depreciated/rebin2d.py
ImageD11/depreciated/recoveromega.py
ImageD11/depreciated/scalem.py
ImageD11/depreciated/scriptable_gui.py
ImageD11/depreciated/test_f2py.py
ImageD11/depreciated/ubitool.py
ImageD11/depreciated/xml_pks.py
ImageD11/depreciated/fsrc/fImageD11module.c
ImageD11/depreciated/fsrc/setup.py
ImageD11/depreciated/fsrc/test_cf.py
ImageD11/depreciated/fsrc/test_xlylzl.py
ImageD11/depreciated/fsrc/test_xlylzl_c.py
ImageD11/depreciated/fsrc/tst.py
ImageD11/depreciated/project/__init__.py
ImageD11/depreciated/project/h5demo1.py
ImageD11/depreciated/project/make_h5_project_fails_no_external.py
ImageD11/depreciated/project/plan_new_peaksearch.md
ImageD11/depreciated/project/project.py
ImageD11/depreciated/project/project_yaml.py
ImageD11/depreciated/project/projects.py
ImageD11/depreciated/project/test_json.py
ImageD11/forward_model/__init__.py
ImageD11/forward_model/forward_model.py
ImageD11/forward_model/forward_projector.py
ImageD11/forward_model/grainmaps.py
ImageD11/forward_model/io.py
ImageD11/forward_model/ori_converter.py
ImageD11/forward_model/pars_conversion.py
ImageD11/forward_model/sample_environment.py
ImageD11/forward_model/test_forward_model_matching_peaks.ipynb
ImageD11/forward_model/test_forward_projector_principle.ipynb
ImageD11/forward_model/test_forward_projector_to_cf.ipynb
ImageD11/forward_model/test_grainmaps.ipynb
ImageD11/forward_model/test_iterative_indexing.ipynb
ImageD11/forward_model/test_pars_conversion.ipynb
ImageD11/nbGui/__init__.py
ImageD11/nbGui/draw_mask.py
ImageD11/nbGui/fit_geometry.py
ImageD11/nbGui/install_ImageD11_from_git.py
ImageD11/nbGui/interactive_peakselect.py
ImageD11/nbGui/nb_utils.py
ImageD11/nbGui/plot3d.ipynb
ImageD11/nbGui/plot3d.py
ImageD11/nbGui/segmenter_gui.py
ImageD11/nbGui/segmenter_gui_utils.py
ImageD11/nbGui/test_gui_fit.ipynb
ImageD11/nbGui/S3DXRD/0_segment_and_label.ipynb
ImageD11/nbGui/S3DXRD/0_segment_frelon.ipynb
ImageD11/nbGui/S3DXRD/4_visualise.ipynb
ImageD11/nbGui/S3DXRD/5_combine_phases.ipynb
ImageD11/nbGui/S3DXRD/6_run_papermill.ipynb
ImageD11/nbGui/S3DXRD/7_stack_layers.ipynb
ImageD11/nbGui/S3DXRD/__init__.py
ImageD11/nbGui/S3DXRD/friedel_pair_map.ipynb
ImageD11/nbGui/S3DXRD/import_test_data.ipynb
ImageD11/nbGui/S3DXRD/pbp_1_indexing.ipynb
ImageD11/nbGui/S3DXRD/pbp_2_visualise.ipynb
ImageD11/nbGui/S3DXRD/pbp_3_refinement.ipynb
ImageD11/nbGui/S3DXRD/run_astra_recon.py
ImageD11/nbGui/S3DXRD/run_mlem_recon.py
ImageD11/nbGui/S3DXRD/run_pbp_recon.py
ImageD11/nbGui/S3DXRD/run_pbp_refine.py
ImageD11/nbGui/S3DXRD/select_for_index_unknown.ipynb
ImageD11/nbGui/S3DXRD/tomo_1_index.ipynb
ImageD11/nbGui/S3DXRD/tomo_1_index_minor_phase.ipynb
ImageD11/nbGui/S3DXRD/tomo_2_map.ipynb
ImageD11/nbGui/S3DXRD/tomo_2_map_minor_phase.ipynb
ImageD11/nbGui/S3DXRD/tomo_3_refinement.ipynb
ImageD11/nbGui/TDXRD/0_segment_frelon.ipynb
ImageD11/nbGui/TDXRD/1_index_default.ipynb
ImageD11/nbGui/TDXRD/1_index_friedel.ipynb
ImageD11/nbGui/TDXRD/1_index_grid.ipynb
ImageD11/nbGui/TDXRD/2_run_papermill.ipynb
ImageD11/nbGui/TDXRD/3_merge_slices.ipynb
ImageD11/nbGui/TDXRD/__init__.py
ImageD11/nbGui/TDXRD/use_only_if_needed/1_3DXRD_refine_parameters.ipynb
ImageD11/nbGui/TDXRD/use_only_if_needed/3_look_at_peaks.ipynb
ImageD11/nbGui/calibration/__init__.py
ImageD11/nbGui/calibration/powder_calib.ipynb
ImageD11/nbGui/calibration/silicon_calib.ipynb
ImageD11/sandbox/CRL.py
ImageD11/sandbox/Index1DSearch.py
ImageD11/sandbox/MTtomoDemo.ipynb
ImageD11/sandbox/__init__.py
ImageD11/sandbox/addcols.py
ImageD11/sandbox/allflips.py
ImageD11/sandbox/art.py
ImageD11/sandbox/bgfilter_grab.py
ImageD11/sandbox/bravias.py
ImageD11/sandbox/buffered_series.py
ImageD11/sandbox/clean_data.py
ImageD11/sandbox/cleanbg.py
ImageD11/sandbox/collect_peak_pixels.py
ImageD11/sandbox/completeness.py
ImageD11/sandbox/cryst_ref_frames.ipynb
ImageD11/sandbox/diffgeo.py
ImageD11/sandbox/factors.py
ImageD11/sandbox/fazit.py
ImageD11/sandbox/fazit_funcs.py
ImageD11/sandbox/find_all_files_interfacing.py
ImageD11/sandbox/find_lattice_sym.py
ImageD11/sandbox/find_pseudo_twins.py
ImageD11/sandbox/fit_plane.py
ImageD11/sandbox/fit_rotating.py
ImageD11/sandbox/fitstrain.py
ImageD11/sandbox/fittrans.py
ImageD11/sandbox/fittrans2.py
ImageD11/sandbox/forwards_project.py
ImageD11/sandbox/fpair.py
ImageD11/sandbox/friedel.py
ImageD11/sandbox/ftomo.py
ImageD11/sandbox/grid_index.py
ImageD11/sandbox/harvest_pixels.py
ImageD11/sandbox/hdfscan.py
ImageD11/sandbox/heightsquare.py
ImageD11/sandbox/highlightpeaks.py
ImageD11/sandbox/idx.py
ImageD11/sandbox/imagecleaner.py
ImageD11/sandbox/incidence.py
ImageD11/sandbox/indexer.py
ImageD11/sandbox/indexer_1d.py
ImageD11/sandbox/knife.py
ImageD11/sandbox/list_folder_images.py
ImageD11/sandbox/make_powder_mask.py
ImageD11/sandbox/make_spline.py
ImageD11/sandbox/makef.py
ImageD11/sandbox/match.py
ImageD11/sandbox/matchquick.py
ImageD11/sandbox/merge_tomo_flt.py
ImageD11/sandbox/mlem.ipynb
ImageD11/sandbox/newpeaksearch.py
ImageD11/sandbox/newpeaksearch3d.py
ImageD11/sandbox/no_pixel_split_fazit.py
ImageD11/sandbox/offset_image.py
ImageD11/sandbox/pandas_colfile.py
ImageD11/sandbox/peaksearch_nxs.py
ImageD11/sandbox/peaksearcher_nxs.py
ImageD11/sandbox/pfun.py
ImageD11/sandbox/pixelmapper.ipynb
ImageD11/sandbox/plotvol.py
ImageD11/sandbox/qtcam.py
ImageD11/sandbox/rad.py
ImageD11/sandbox/ringselect.py
ImageD11/sandbox/rl.py
ImageD11/sandbox/scanning_geometry.ipynb
ImageD11/sandbox/segment.py
ImageD11/sandbox/segment2d.py
ImageD11/sandbox/segment_ma4752_alu.py
ImageD11/sandbox/segmenter.py
ImageD11/sandbox/sharpen_search.py
ImageD11/sandbox/sigma_3_matrices.py
ImageD11/sandbox/spot_harvest.py
ImageD11/sandbox/strainprocess.py
ImageD11/sandbox/teo.py
ImageD11/sandbox/twingen.py
ImageD11/sandbox/twodpeak.py
ImageD11/sandbox/ubi2color.py
ImageD11/sandbox/watch.py
ImageD11/sandbox/watch_direcs_h2b.py
ImageD11/sandbox/abonnin/fix_omega_angles.py
ImageD11/sandbox/abonnin/harvest_grains.py
ImageD11/sandbox/abonnin/make_oar_jobs.py
ImageD11/sandbox/abonnin/make_point_sino.py
ImageD11/sandbox/abonnin/makegv.py
ImageD11/sandbox/abonnin/many_peak_searches.py
ImageD11/sandbox/abonnin/search_peaks.py
ImageD11/sandbox/abonnin/select_spatial_point.py
ImageD11/sandbox/avxsum/bench_imsum.py
ImageD11/sandbox/avxsum/imsum.c
ImageD11/sandbox/diffracCl/diffracCl.c
ImageD11/sandbox/diffracCl/diffracCl.py
ImageD11/sandbox/ev78/edf2nrrd.py
ImageD11/sandbox/ev78/integrate_them.py
ImageD11/sandbox/ev78/makevols.py
ImageD11/sandbox/ev78/rad.py
ImageD11/sandbox/ev78/watch_direcs.py
ImageD11/sandbox/gold/grab_the_pixels.py
ImageD11/sandbox/gold/newpeaksearch.py
ImageD11/sandbox/jadb/multiphase/par_json_test.py
ImageD11/sandbox/ma4750/custom_peak_search.py
ImageD11/sandbox/ma4750/custom_peak_search_ma5179.py
ImageD11/sandbox/ma4750/to_flt.py
ImageD11/sandbox/map/gridgrain.py
ImageD11/sandbox/map/gridmap.py
ImageD11/sandbox/map/grids.py
ImageD11/sandbox/map/mp.py
ImageD11/sandbox/map/plot_gmap.py
ImageD11/sandbox/map/uniqify_ubi.py
ImageD11/sandbox/orix/test_pole_figures.ipynb
ImageD11/sandbox/segment_hdf_slurm/segment1.py
ImageD11/silxGui/__init__.py
ImageD11/silxGui/readme.md
ImageD11/silxGui/silx_colfile.py
ImageD11/silxGui/silx_plot3d.py
ImageD11/silxGui/silx_sptview.py
ImageD11/sinograms/__init__.py
ImageD11/sinograms/assemble_label.py
ImageD11/sinograms/dataset.py
ImageD11/sinograms/geometry.py
ImageD11/sinograms/lima_segmenter.py
ImageD11/sinograms/point_by_point.py
ImageD11/sinograms/polefigures.py
ImageD11/sinograms/properties.py
ImageD11/sinograms/roi_iradon.py
ImageD11/sinograms/sinogram.py
ImageD11/sinograms/sinogram2crysalis.py
ImageD11/sinograms/tensor_map.py
ImageD11/tkGui/__init__.py
ImageD11/tkGui/guiindexer.py
ImageD11/tkGui/guimaker.py
ImageD11/tkGui/guipeaksearch.py
ImageD11/tkGui/guisolver.py
ImageD11/tkGui/guitransformer.py
ImageD11/tkGui/listdialog.py
ImageD11/tkGui/plot3d.py
ImageD11/tkGui/twodplot.py
data/CeO2.par
data/F21.spline
data/eiger_example_geometry.par
data/eiger_example_pars.json
data/f4mnew.spline
data/frelon21_mar16.spline
data/frelon_example_geometry.par
data/frelon_example_pars.json
docs/16x16.ico
docs/32x32.ico
docs/48x48.ico
docs/BilbaoCrystallographicServerStraintensorcalculation.rtf
docs/ImageD11_manual.rtf
docs/Strains_ImageD11.docx
docs/angles.png
docs/angles.svg
docs/com_guide.odt
docs/com_guide.pdf
docs/git_merge.txt
docs/howto_compile_win64.txt
docs/howto_gdb_crashing_c.txt
docs/howto_install_esrf.txt
docs/icon.svg
docs/icons.svg
docs/icons.zip
docs/makedocs.py
docs/multi.ico
docs/scor_gvec_z_sympy.py
docs/todo_historical.txt
docs/verify.svg
docs/ewoks/GeometryComputation.rst
docs/ewoks/SegmentFrame.rst
docs/ewoks/SegmentScan.rst
docs/ewoks/SpatialCorrection.rst
docs/sphx/Makefile
docs/sphx/advanced.rst
docs/sphx/batchprocessing.rst
docs/sphx/calibration.rst
docs/sphx/changelog.rst
docs/sphx/conf.py
docs/sphx/fileformats.rst
docs/sphx/filtering.rst
docs/sphx/filtering.txt
docs/sphx/index.rst
docs/sphx/index_unknown.rst
docs/sphx/indexing.rst
docs/sphx/installation.rst
docs/sphx/make.bat
docs/sphx/parallel.rst
docs/sphx/peaksearching.rst
docs/sphx/programs.rst
docs/sphx/refinement.rst
docs/sphx/related.rst
docs/sphx/requirements.txt
docs/sphx/rsv_mapper.rst
scripts/ImageD11_2_shelx.py
scripts/ImageD11_gui.py
scripts/avg_par.py
scripts/bgmaker.py
scripts/cutgrains.py
scripts/edfheader.py
scripts/enlightenment.py
scripts/filtergrain.py
scripts/fit2dcake.py
scripts/fitgrain.py
scripts/fix_spline.py
scripts/huber2bruker.py
scripts/id11_summarize.py
scripts/index_unknown.py
scripts/makemap.py
scripts/merge_flt.py
scripts/pars_2_sweeper.py
scripts/peaksearch.py
scripts/plotImageD11map.py
scripts/plotedf.py
scripts/plotgrainhist.py
scripts/plotlayer.py
scripts/powderimagetopeaks.py
scripts/refine_em.py
scripts/rubber.py
scripts/spatialfix.py
scripts/tomapper.py
scripts/ubi2cellpars.py
src/ImageD11_cmath.h
src/__init__.py
src/_cImageD11.pyf
src/blobs.c
src/blobs.h
src/cImageD11.h
src/cdiffraction.c
src/cdiffraction.h
src/cimaged11utils.c
src/closest.c
src/connectedpixels.c
src/darkflat.c
src/deriv.c
src/f2py_notes.txt
src/localmaxlabel.c
src/make_pyf.py
src/sparse_image.c
src/splat.c
test/papermill_test_notebooks.py
test/run_tests.py
test/sparse_overlap_test.py
test/spatial2k.spline
test/test_analysis_schema.py
test/test_cImageD11.py
test/test_clean_mask.py
test/test_closest_vec.py
test/test_columnfile.py
test/test_columnfile_pandas.py
test/test_compress_duplicates.py
test/test_fetch_data.py
test/test_finite_strain.py
test/test_forking.py
test/test_geometry.py
test/test_indexing.py
test/test_localmaxlabel.py
test/test_misori.py
test/test_orix.py
test/test_overlapimage.py
test/test_peaksearch.py
test/test_point_by_point.py
test/test_put_incr.py
test/test_score_gvec_z.py
test/test_sparse_image.py
test/test_spline.sh
test/test_sym_u.py
test/test_transform.py
test/test_ubito.py
test/test_uncomputegv.py
test/testcol.py
test/testlattice.py
test/testscale.py
test/demo/eu2.pars
test/demo/nbsplat.py
test/demo/notes.doc
test/demo/notes.pdf
test/demo/qtsplat.py
test/demo/test.gve
test/demo/test.py
test/demo/testsplat.py
test/demo/tksplat.py
test/eps_sig/CuAlBe_scan10.map
test/eps_sig/__init__.py
test/eps_sig/mypar.par
test/eps_sig/test.par
test/eps_sig/test.py
test/eps_sig/test_eps.py
test/gv_general/__init__.py
test/gv_general/test_gv_general.py
test/index_demos/__init__.py
test/index_demos/generate_gv.py
test/index_demos/pairFFT.py
test/ken_simul/__init__.py
test/ken_simul/gcalc.py
test/ken_simul/simAl.gve
test/ken_simul/test.idx
test/ken_simul/test.ubi
test/ken_simul/test_all_pairs.py
test/ken_simul/testken.py
test/makemap/demo_grid.py
test/makemap/map.ubi
test/makemap/test.flt
test/makemap/test.prm
test/nac_demo/nac.prm
test/nac_demo/pyqttv.py
test/nac_demo/rd.cpp
test/peaksearchtiftest/__init__.py
test/peaksearchtiftest/make_test_data.py
test/peaksearchtiftest/scriptedpeaksearch.py
test/pixelmapper/CeO2.par
test/pixelmapper/filter_weak.ipynb
test/pixelmapper/pixelmapper.ipynb
test/pkfom/0.par
test/pkfom/eu3.map
test/pkfom/pkfom.py
test/quantix/g3.flt
test/quantix/g3.gve
test/quantix/g3.idx
test/quantix/g3.pars
test/quantix/g3.ubi
test/quantix/testfitfilt.py
test/silicon/check_centers.ipynb
test/silicon/crystal_refine.ipynb
test/simul_1000_grains/Al.cif
test/simul_1000_grains/README.txt
test/simul_1000_grains/bencher.py
test/simul_1000_grains/compare.py
test/simul_1000_grains/easy.py
test/simul_1000_grains/grid_index.py
test/simul_1000_grains/idx.py
test/simul_1000_grains/make_u_t.py
test/simul_1000_grains/make_u_t_easy.py
test/simul_1000_grains/res2map.py
test/simul_1000_grains/run_simul.py
test/simul_1000_grains/shake.py
test/simul_1000_grains/simAl.ini
test/simul_1000_grains/test_mappers.py
test/simul_1000_grains/timing.txt
test/simul_1000_grains/todo.txt
test/test_index_unknown/1.ubi
test/test_index_unknown/2.ubi
test/test_index_unknown/3.ubi
test/test_index_unknown/__init__.py
test/test_index_unknown/lattice_trans.ipynb
test/test_index_unknown/test_index_unknown.py
test/test_mmo/__init__.py
test/test_mmo/make_test_data_mmo.py
test/test_rsv/Fe3O4.cif
test/test_rsv/Fe3O4.inp
test/test_rsv/plot_Fe3O4.ipynb
test/test_rsv/run_demo.py
test/testcolfile2db/__init__.py
test/testcolfile2db/col_test1.tif.gz
test/testcolfile2db/col_test10.tif.gz
test/testcolfile2db/col_test2.tif.gz
test/testcolfile2db/col_test3.tif.gz
test/testcolfile2db/col_test4.tif.gz
test/testcolfile2db/col_test5.tif.gz
test/testcolfile2db/col_test6.tif.gz
test/testcolfile2db/col_test7.tif.gz
test/testcolfile2db/col_test8.tif.gz
test/testcolfile2db/col_test9.tif.gz
test/testcolfile2db/testcolfile2db.py
test/testconnectedpixels/__init__.py
test/testconnectedpixels/testconnectedpixels.py
test/testdatasets/test_datasets.py
test/testlabelimage/__init__.py
test/testlabelimage/runtestlabelimagemerge.py
test/testlabelimage/testlabelimage.py
test/twinprob/Al.cif
test/twinprob/Al.gve
test/twinprob/Al.inp
test/twinprob/__init__.py
test/twinprob/test_twin.py
webgui/data.js
webgui/demo1.html
webgui/demo_canvas.html
webgui/gl-matrix-min.js
webgui/notes_for_new_gui.md
webgui/webgl-utils.js