.pre-commit-config.yaml
.python-version
CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
Dockerfile
LICENSE
MANIFEST.in
Makefile
README.md
REPRODUCIBILITY.md
mkdocs.yml
pyproject.toml
uv.lock
configs/base.yaml
configs/experiment/dlpfc_holdout.yaml
configs/experiment/lambda_sweep.yaml
configs/experiment/smoke.yaml
configs/experiment/synthetic_holdout.yaml
configs/transfer/dlpfc_graphst.yaml
configs/transfer/dlpfc_quick.yaml
configs/transfer/dlpfc_quick_lodo.yaml
configs/transfer/dlpfc_stagate.yaml
configs/transfer/merfish_stagate.yaml
configs/transfer/smoke.yaml
configs/transfer/starmap_pfc_stagate.yaml
docs/api.md
docs/demo.md
docs/index.md
docs/methods.md
docs/related_work.md
docs/results.md
docs/roadmap.md
docs/usage.md
docs/figures/benchmark.png
docs/figures/dlpfc_benchmark.png
docs/figures/dlpfc_domains.png
docs/figures/dlpfc_top_genes.png
docs/figures/dlpfc_transfer_ari_vs_k.png
docs/figures/dlpfc_transfer_matrix_K100.png
docs/figures/domains.png
docs/report/caust_report.pdf
docs/report/caust_report.tex
docs/tutorials/dlpfc_quickstart.ipynb
scripts/benchmark.py
scripts/demo.py
src/caust/__init__.py
src/caust/cli.py
src/caust/cluster.py
src/caust/config.py
src/caust/data.py
src/caust/datasets.py
src/caust/dlpfc.py
src/caust/experiment.py
src/caust/figures.py
src/caust/graph.py
src/caust/intervention.py
src/caust/invariance.py
src/caust/pipeline.py
src/caust/pl.py
src/caust/py.typed
src/caust/repro.py
src/caust/tl.py
src/caust/transfer.py
src/caust.egg-info/PKG-INFO
src/caust.egg-info/SOURCES.txt
src/caust.egg-info/dependency_links.txt
src/caust.egg-info/entry_points.txt
src/caust.egg-info/requires.txt
src/caust.egg-info/top_level.txt
src/caust/models/__init__.py
src/caust/models/base.py
src/caust/models/graphst.py
src/caust/models/simple.py
src/caust/models/stagate.py
tests/conftest.py
tests/test_api.py
tests/test_caust.py
tests/test_cli.py
tests/test_cluster.py
tests/test_config.py
tests/test_datasets.py
tests/test_dlpfc.py
tests/test_experiment.py
tests/test_graph.py
tests/test_graphst.py
tests/test_models.py
tests/test_pipeline.py
tests/test_repro.py
tests/test_selection.py
tests/test_stagate.py
tests/test_transfer.py