.coveragerc
.gitattributes
.gitignore
.travis.yml
CHANGELOG.md
LICENSE.txt
README.md
flow.jpg
requirements.txt
setup.py
CIRCexplorer.egg-info/PKG-INFO
CIRCexplorer.egg-info/SOURCES.txt
CIRCexplorer.egg-info/dependency_links.txt
CIRCexplorer.egg-info/entry_points.txt
CIRCexplorer.egg-info/pbr.json
CIRCexplorer.egg-info/requires.txt
CIRCexplorer.egg-info/top_level.txt
circ/CIRCexplorer.py
circ/__init__.py
circ/fetch_ucsc.py
circ/genomic_interval.py
circ/star_parse.py
example/output_example.txt
example/ref_example.txt
test/__init__.py
test/test_annotate.py
test/test_convert.py
test/test_fix.py
test/utils.py
test/data/annotated_junction.txt
test/data/chr21.fa
test/data/chr21.fa.fai
test/data/circular_RNA.txt
test/data/fusion_junction.txt
test/data/ref.txt
test/data/tophat_fusion.bam
test/data/tophat_fusion.bam.bai