.gitignore
.pre-commit-config.yaml
LICENSE
README.md
mkdocs.yml
noxfile.py
pyproject.toml
.github/workflows/ci.yml
.github/workflows/draft-pdf.yml
.github/workflows/tests.yml
assets/favicon.png
assets/favicon.svg
assets/images/analyse_GUI.png
assets/images/pipeline.png
assets/images/result_HA_slice.jpeg
assets/images/result_test_slice.png
assets/images/transmural_profile.png
assets/logos/HOA_logo.png
assets/logos/heart_logo_dark.png
assets/logos/heart_logo_dark.svg
assets/logos/heart_logo_light.png
assets/logos/heart_logo_light.svg
docs/citing.md
docs/contributing.md
docs/index.md
docs/assets/favicon.png
docs/assets/favicon.svg
docs/assets/images/analyse_GUI.png
docs/assets/images/result_HA_slice.jpeg
docs/assets/images/result_HA_slice_old.png
docs/assets/images/result_test_slice.png
docs/assets/images/streamline_example.png
docs/assets/images/transmural_profile.png
docs/assets/images/vectors_example.png
docs/assets/logos/HOA_logo.png
docs/assets/logos/heart_logo.svg
docs/assets/logos/heart_logo_dark.png
docs/assets/logos/heart_logo_dark.svg
docs/getting-started/examples.md
docs/getting-started/first-steps.md
docs/getting-started/index.md
docs/getting-started/installation.md
docs/getting-technical/angles.md
docs/getting-technical/conventions.md
docs/getting-technical/fractional_anisotropy.md
docs/getting-technical/index.md
docs/getting-technical/structure_tensor.md
docs/getting-technical/tractography.md
docs/javascripts/extra.js
docs/javascripts/math-render.js
docs/reference/api.md
docs/reference/cli.md
docs/reference/configuration.md
docs/reference/index.md
docs/stylesheets/extra.css
docs/stylesheets/mkdocstrings.css
examples/README.md
examples/parameters_example.conf
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paper/paper.bib
paper/paper.md
paper/paper.pdf
paper/figs/pipeline.png
paper/figs/pipeline.svg
src/cardiotensor/__init__.py
src/cardiotensor.egg-info/PKG-INFO
src/cardiotensor.egg-info/SOURCES.txt
src/cardiotensor.egg-info/dependency_links.txt
src/cardiotensor.egg-info/entry_points.txt
src/cardiotensor.egg-info/requires.txt
src/cardiotensor.egg-info/top_level.txt
src/cardiotensor/analysis/__init__.py
src/cardiotensor/analysis/analysis_functions.py
src/cardiotensor/analysis/gui_analysis_tool.py
src/cardiotensor/launcher/__init__.py
src/cardiotensor/launcher/slurm_launcher.py
src/cardiotensor/orientation/__init__.py
src/cardiotensor/orientation/orientation_computation_functions.py
src/cardiotensor/orientation/orientation_computation_pipeline.py
src/cardiotensor/scripts/compute_orientation.py
src/cardiotensor/scripts/generate_streamlines.py
src/cardiotensor/scripts/gui_analysis_tool.py
src/cardiotensor/scripts/slurm_launcher.py
src/cardiotensor/scripts/visualize_streamlines.py
src/cardiotensor/scripts/visualize_vector_field.py
src/cardiotensor/tractography/__init__.py
src/cardiotensor/tractography/export_to_amira.py
src/cardiotensor/tractography/generate_streamlines.py
src/cardiotensor/utils/DataReader.py
src/cardiotensor/utils/__init__.py
src/cardiotensor/utils/downsampling.py
src/cardiotensor/utils/utils.py
src/cardiotensor/utils/vector_vtk_export.py
src/cardiotensor/visualization/fury_plotting_streamlines.py
src/cardiotensor/visualization/fury_plotting_vectors.py
src/cardiotensor/visualization/streamlines.py
src/cardiotensor/visualization/vector_field.py
tests/test_DataReader.py
tests/test_analyse_functions.py
tests/test_analysis_functions.py
tests/test_orientation_computation_functions.py
tests/test_utils.py