Metadata-Version: 2.1
Name: arcos-gui
Version: 0.0.1
Summary: A napari plugin to interact with the ARCOS package
Home-page: https://github.com/bgraedel/arcos-gui
Author: Benjamin Grädel
Author-email: benjamin.graedel@unibe.ch
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/bgraedel/arcos-gui/issues
Project-URL: Documentation, https://github.com/bgraedel/arcos-gui#README.md
Project-URL: Source Code, https://github.com/bgraedel/arcos-gui
Project-URL: User Support, https://github.com/bgraedel/arcos-gui/issues
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Software Development :: Testing
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: magicgui (>=0.3.0)
Requires-Dist: matplotlib
Requires-Dist: napari (>=0.4.14)
Requires-Dist: numpy (>=1.22.2)
Requires-Dist: pandas (>=1.4.1)
Requires-Dist: rpy2 (>=3.4.5)
Requires-Dist: scikit-image (>=0.19.1)
Requires-Dist: scipy (>=1.8.0)
Provides-Extra: testing
Requires-Dist: pyqt5 ; extra == 'testing'
Requires-Dist: pytest ; extra == 'testing'
Requires-Dist: pytest-qt ; extra == 'testing'

# arcos-gui

[![License](https://img.shields.io/pypi/l/arcos-gui.svg?color=green)](https://github.com/bgraedel/arcos-gui/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/arcos-gui.svg?color=green)](https://pypi.org/project/arcos-gui)
[![Python Version](https://img.shields.io/pypi/pyversions/arcos-gui.svg?color=green)](https://python.org)
[![tests](https://github.com/bgraedel/arcos-gui/workflows/tests/badge.svg)](https://github.com/bgraedel/arcos-gui/actions)
[![codecov](https://codecov.io/gh/bgraedel/arcos-gui/branch/main/graph/badge.svg)](https://codecov.io/gh/bgraedel/arcos-gui)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/arcos-gui)](https://napari-hub.org/plugins/arcos-gui)

A napari plugin to detect and visualize collective signalling events

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

## Installation

prior to installing arcos-gui it requires a working R installation with the ARCOS libary github.com/dmattek/ARCOS installed.

You can install `arcos-gui` via [pip]:

    pip install arcos-gui

## OS Support
This package relies on a library called rpy2 that allows exection of R function within python code. It officially only supports UNIX based systems (Linux, MacOS).
For Windows users to get it to work requires adding a Path system environment variable that points to the R binary.

To install latest development version :

    pip install git+https://github.com/bgraedel/arcos-gui.git

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"arcos-gui" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/bgraedel/arcos-gui/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/


