Metadata-Version: 2.1
Name: SimpleReg
Version: 0.3.1
Summary: SimpleReg is a research-focused toolkit that provides tools helpful for (medical) image registration and processing.
Home-page: https://github.com/gift-surg/SimpleReg
Author: Michael Ebner
Author-email: michael.ebner.14@ucl.ac.uk
License: BSD-3-Clause
Description: # SimpleReg 
        
        SimpleReg is a Python-based open-source toolkit that provides tools helpful for (medical) image registration and processing. Interfaces to the following registration frameworks are available:
        
        * [SimpleITK][simpleitk]
        * [NiftyReg][niftyreg]
        * [FLIRT][fsl]
        * [ITK_NiftyMIC][itkniftymic] as an extension to [WrapITK][wrapitk]
        
        The algorithm and software were developed by [Michael Ebner][mebner] at the [Translational Imaging Group][tig] in the [Centre for Medical Image Computing][cmic] at [University College London (UCL)][ucl].
        
        If you have any questions or comments, please drop me an email to `michael.ebner.14@ucl.ac.uk`.
        
        ## Installation
        
        SimpleReg was developed in
        
        * Mac OS X 10.10 and 10.12
        * Ubuntu 14.04 and 16.04
        
        and tested for Python 2.7.12 and 3.5.2.
        
        Install required external tools and libraries by following the
        * [Installation Instructions of SimpleReg Dependencies][simplereg-dependencies]
        
        Clone the SimpleReg repository by
        * `git clone git@github.com:gift-surg/SimpleReg.git` 
        
        Install all Python-dependencies by 
        * `pip install -r requirements.txt`
        
        Install SimpleReg by running
        * `pip install .`
        
        Check installation via
        * `python -m nose tests/installation_test.py`
        
        ## Licensing and Copyright
        Copyright (c) 2019, [University College London][ucl].
        This framework is made available as free open-source software under the [BSD-3-Clause License][bsd]. Other licenses may apply for dependencies.
        
        ## Funding
        This work is partially funded by the UCL [Engineering and Physical Sciences Research Council (EPSRC)][epsrc] Centre for Doctoral Training in Medical Imaging (EP/L016478/1), the Innovative Engineering for Health award ([Wellcome Trust][wellcometrust] [WT101957] and [EPSRC][epsrc] [NS/A000027/1]), and supported by researchers at the [National Institute for Health Research][nihr] [University College London Hospitals (UCLH)][uclh] Biomedical Research Centre.
        
        [citation]: https://www.sciencedirect.com/science/article/pii/S1053811917308042
        [mebner]: https://www.linkedin.com/in/ebnermichael
        [tig]: http://cmictig.cs.ucl.ac.uk
        [bsd]: https://opensource.org/licenses/BSD-3-Clause
        [giftsurg]: http://www.gift-surg.ac.uk
        [cmic]: http://cmic.cs.ucl.ac.uk
        [guarantors]: https://guarantorsofbrain.org/
        [ucl]: http://www.ucl.ac.uk
        [uclh]: http://www.uclh.nhs.uk
        [epsrc]: http://www.epsrc.ac.uk
        [wellcometrust]: http://www.wellcome.ac.uk
        [mssociety]: https://www.mssociety.org.uk/
        [nihr]: http://www.nihr.ac.uk/research
        [itkniftymic]: https://github.com/gift-surg/ITK_NiftyMIC/wikis/home
        [niftymic-install]: https://github.com/gift-surg/NiftyMIC/wikis/niftymic-installation
        [nsol]: https://github.com/gift-surg/NSoL
        [simplereg]: https://github.com/gift-surg/SimpleReg
        [simplereg-dependencies]: https://github.com/gift-surg/SimpleReg/wikis/simplereg-dependencies
        [pysitk]: https://github.com/gift-surg/PySiTK
        [wrapitk]: https://itk.org/Wiki/ITK/WrapITK_Status
        [niftyreg]: https://github.com/KCL-BMEIS/niftyreg/wiki
        [fsl]: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
        [simpleitk]: http://www.simpleitk.org/
Keywords: development registration
Platform: UNKNOWN
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Topic :: Software Development :: Build Tools
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 3
Description-Content-Type: text/markdown
