Metadata-Version: 2.1
Name: antibody_ngs_pipeline
Version: 1.0.0.dev0
Summary: Bulk antibody sequence preprocessing, annotaion with abstar, upload to MongoDB and S3
Home-page: https://www.github.com/CollinJ0/antibody_ngs_pipeline
Author: CollinJ0
License: UNKNOWN
Description: # Antibody NGS Pipeline
        
        Bulk antibody sequence preprocessing, annotation with abstar, upload to MongoDB and S3
        
        ### install  
        `pip install antibody-ngs-pipeline`
        
        
        ### use  
        
        To run antibody_ngs_pipeline:  
        `antibody_ngs_pipeline`
        
        To run antibody_ngs_pipeline with FASTQC report on raw data:  
        `antibody_ngs_pipeline -f`
          
        To run antibody_ngs_pipeline with adapter trimming by CutAdapt:  
        `antibody_ngs_pipeline -t <path-to-adapters.fasta>`
        
        To run antibody_ngs_pipeline with adapter trimming by CutAdapt  
        and FASTQC report on both raw data and adapter trimmed data:  
        `antibody_ngs_pipeline -f -t <path-to-adapters.fasta>`
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
