README.md
pyproject.toml
alf_tools/__init__.py
alf_tools.egg-info/PKG-INFO
alf_tools.egg-info/SOURCES.txt
alf_tools.egg-info/dependency_links.txt
alf_tools.egg-info/requires.txt
alf_tools.egg-info/top_level.txt
alf_tools/datasets/__init__.py
alf_tools/datasets/flip.py
alf_tools/datasets/gfp.py
alf_tools/datasets/proteingym.py
alf_tools/datasets/guacamol/__init__.py
alf_tools/datasets/guacamol/guacamol_dataset.py
alf_tools/datasets/guacamol/guacamol_scoring.py
alf_tools/datasets/guacamol/guacamol_utils.py
alf_tools/models/__init__.py
alf_tools/models/chemprop.py
alf_tools/models/cnn.py
alf_tools/models/ensemble.py
alf_tools/models/esm2.py
alf_tools/models/esmfold.py
alf_tools/models/gp.py
alf_tools/models/mlip.py
alf_tools/models/mlp.py
alf_tools/models/pyrosetta.py
alf_tools/models/esm_utils/__init__.py
alf_tools/models/esm_utils/config.py
alf_tools/models/esm_utils/loss.py
alf_tools/models/esm_utils/scoring_function.py
alf_tools/models/utils/__init__.py
alf_tools/models/utils/botorch_model_wrapper.py
alf_tools/models/utils/botorch_utils.py
alf_tools/models/utils/config_utils.py
alf_tools/models/utils/data_utils.py
alf_tools/models/utils/sequence_utils.py
alf_tools/models/utils/torch_utils.py
alf_tools/models/utils/mlip_utils/__init__.py
alf_tools/models/utils/mlip_utils/config.py
alf_tools/models/utils/mlip_utils/data.py
alf_tools/models/utils/mlip_utils/model_registry.py
alf_tools/optimizer/acquisition_functions/__init__.py
alf_tools/optimizer/acquisition_functions/botorch_acquisition.py
alf_tools/optimizer/acquisition_functions/botorch_samplers.py
alf_tools/optimizer/acquisition_functions/core_set.py
alf_tools/optimizer/acquisition_functions/expected_improvement.py
alf_tools/optimizer/acquisition_functions/greedy.py
alf_tools/optimizer/acquisition_functions/thompson_sampling.py
alf_tools/optimizer/acquisition_functions/ucb.py
alf_tools/optimizer/search/__init__.py
alf_tools/optimizer/search/botorch_continuous_search.py
alf_tools/optimizer/search/single_mutant_search.py
alf_tools/utils/__init__.py
alf_tools/utils/constants.py