LICENSE.md
README.md
pyproject.toml
modules/__init__.py
modules/bruker_concat_tif.py
modules/compute_zcorr.py
modules/extraction.py
modules/motion_correction.py
modules/utils/plot_zones.py
modules/utils/save_z_motion_args.py
optimouse.egg-info/PKG-INFO
optimouse.egg-info/SOURCES.txt
optimouse.egg-info/dependency_links.txt
optimouse.egg-info/requires.txt
optimouse.egg-info/top_level.txt
pipeline/__init__.py
pipeline/pipeline_cnmf.py
pipeline/pipeline_mcorr.py
pipeline/roi_zcorr.py
pipeline/configs/config_C57_O1M2_10022023_run1run2.json
pipeline/configs/config_C57_O1M2_10022023_run1run2_tiff_suite2p.json
pipeline/configs/config_C57_O1M2_10022023_run1run2_tiff_suite2p_extractonly_localtest.json
pipeline/configs/config_C57_O1M2_10022023_run1run2_tiff_suite2p_og.json
pipeline/configs/config_C57_O1M2_10022023_run1run2run3run4.json
pipeline/configs/config_template_cnmf.json
pipeline/configs/config_template_suite2p.json
pipeline/configs/config_test.json
pipeline/utils/__init__.py
pipeline/utils/config_loader.py
pipeline/utils/pipeline_utils.py
tests/test_make_composite_f_anat.py
tests/test_module.py
tests/test_motion_correction.py
tests/test_patch_plots_efficient.py
tests/test_subtract_z_motion_patches.py