.pre-commit-config.yaml
License.txt
MANIFEST.in
Readme.md
changelog.md
launcher.spec
lgpl-3.0.txt
pyproject.toml
pytest.ini
setup.cfg
setup.py
docs/Makefile
docs/PartSegImage.rst
docs/conf.py
docs/custom_application.rst
docs/index.rst
docs/make.bat
docs/requirements.txt
docs/PartSegCore/base.rst
docs/PartSegCore/color_image.rst
docs/PartSegCore/index.rst
docs/PartSegCore/segmentation.rst
docs/PartSegCore/sprawl_utils.rst
docs/PartSegCore/analysis/base.rst
docs/PartSegCore/analysis/batch_processing.rst
docs/PartSegCore/analysis/calculation_plan.rst
docs/PartSegCore/mask/io_functions.rst
docs/_static/.keep
docs/common_backend/index.rst
docs/common_gui/advanced_tabs.rst
docs/common_gui/algorithms_description.rst
docs/common_gui/channel_control.rst
docs/common_gui/collapse_checkbox.rst
docs/common_gui/colormap_creator.rst
docs/common_gui/error_report.rst
docs/common_gui/index.rst
docs/common_gui/numpy_qimage.rst
docs/common_gui/universal_gui_part.rst
help/PartSeg.qhc
help/PartSeg.qhcp
help/advanced.html
help/doc.qch
help/doc.qhp
help/export.html
help/index.html
help/view.html
help/icons/configure.png
help/icons/document-open.png
help/icons/document-save-as.png
help/icons/draw-eraser.png
help/icons/draw-path.png
help/icons/image-zoom-in.png
help/icons/task-accepted.png
help/icons/transform-move.png
help/icons/zoom-original.png
help/icons/zoom-select.png
images/analysis_gui.png
images/analysis_gui2.png
images/launcher.png
images/mask_gui.png
images/measurement.png
package/PartSeg/__init__.py
package/PartSeg/__main__.py
package/PartSeg/changelog.py
package/PartSeg/launcher_main.py
package/PartSeg/test_widget_main.py
package/PartSeg.egg-info/PKG-INFO
package/PartSeg.egg-info/SOURCES.txt
package/PartSeg.egg-info/dependency_links.txt
package/PartSeg.egg-info/entry_points.txt
package/PartSeg.egg-info/requires.txt
package/PartSeg.egg-info/top_level.txt
package/PartSeg/common_backend/__init__.py
package/PartSeg/common_backend/abstract_class.py
package/PartSeg/common_backend/base_argparser.py
package/PartSeg/common_backend/base_settings.py
package/PartSeg/common_backend/except_hook.py
package/PartSeg/common_backend/image_read_thread.py
package/PartSeg/common_backend/load_backup.py
package/PartSeg/common_backend/partially_const_dict.py
package/PartSeg/common_backend/progress_thread.py
package/PartSeg/common_backend/segmentation_thread.py
package/PartSeg/common_gui/__init__.py
package/PartSeg/common_gui/about_dialog.py
package/PartSeg/common_gui/advanced_tabs.py
package/PartSeg/common_gui/algorithms_description.py
package/PartSeg/common_gui/channel_control.py
package/PartSeg/common_gui/collapse_checkbox.py
package/PartSeg/common_gui/colormap_creator.py
package/PartSeg/common_gui/colors_choose.py
package/PartSeg/common_gui/custom_load_dialog.py
package/PartSeg/common_gui/custom_save_dialog.py
package/PartSeg/common_gui/dim_combobox.py
package/PartSeg/common_gui/equal_column_layout.py
package/PartSeg/common_gui/error_report.py
package/PartSeg/common_gui/flow_layout.py
package/PartSeg/common_gui/icon_selector.py
package/PartSeg/common_gui/image_adjustment.py
package/PartSeg/common_gui/label_create.py
package/PartSeg/common_gui/lock_checkbox.py
package/PartSeg/common_gui/main_window.py
package/PartSeg/common_gui/mask_widget.py
package/PartSeg/common_gui/multiple_file_widget.py
package/PartSeg/common_gui/napari_image_view.py
package/PartSeg/common_gui/napari_viewer_wrap.py
package/PartSeg/common_gui/numpy_qimage.py
package/PartSeg/common_gui/save_dialog.py
package/PartSeg/common_gui/select_multiple_files.py
package/PartSeg/common_gui/show_directory_dialog.py
package/PartSeg/common_gui/stack_image_view.py
package/PartSeg/common_gui/stacked_widget_with_selector.py
package/PartSeg/common_gui/universal_gui_part.py
package/PartSeg/common_gui/vetical_scroll_area.py
package/PartSeg/common_gui/waiting_dialog.py
package/PartSeg/custom_application/__init__.py
package/PartSeg/custom_application/application.py
package/PartSeg/launcher/__init__.py
package/PartSeg/launcher/main_window.py
package/PartSeg/plugins/__init__.py
package/PartSeg/plugins/itk_snap_save/__init__.py
package/PartSeg/plugins/modeling_save/__init__.py
package/PartSeg/plugins/modeling_save/save_modeling_data.py
package/PartSeg/plugins/old_partseg/__init__.py
package/PartSeg/plugins/old_partseg/old_partseg.py
package/PartSeg/segmentation_analysis/__init__.py
package/PartSeg/segmentation_analysis/advanced_window.py
package/PartSeg/segmentation_analysis/batch_window.py
package/PartSeg/segmentation_analysis/calculation_pipeline_thread.py
package/PartSeg/segmentation_analysis/image_view.py
package/PartSeg/segmentation_analysis/interpolate_dialog.py
package/PartSeg/segmentation_analysis/interpolate_thread.py
package/PartSeg/segmentation_analysis/main_window.py
package/PartSeg/segmentation_analysis/measurement_widget.py
package/PartSeg/segmentation_analysis/partseg_settings.py
package/PartSeg/segmentation_analysis/prepare_plan_widget.py
package/PartSeg/segmentation_analysis/profile_export.py
package/PartSeg/segmentation_mask/__init__.py
package/PartSeg/segmentation_mask/batch_proceed.py
package/PartSeg/segmentation_mask/image_view.py
package/PartSeg/segmentation_mask/main_window.py
package/PartSeg/segmentation_mask/segmentation_info_dialog.py
package/PartSeg/segmentation_mask/simple_measurements.py
package/PartSeg/segmentation_mask/stack_settings.py
package/PartSeg/tiff_image/__init__.py
package/PartSeg/utils/__init__.py
package/PartSegCore/__init__.py
package/PartSegCore/algorithm_describe_base.py
package/PartSegCore/autofit.py
package/PartSegCore/channel_class.py
package/PartSegCore/class_generator.py
package/PartSegCore/cmap_utils.py
package/PartSegCore/colors.py
package/PartSegCore/convex_fill.py
package/PartSegCore/custom_colormaps.py
package/PartSegCore/custom_name_generate.py
package/PartSegCore/global_settings.py
package/PartSegCore/image_operations.py
package/PartSegCore/io_utils.py
package/PartSegCore/json_hooks.py
package/PartSegCore/mask_create.py
package/PartSegCore/mask_partition_utils.py
package/PartSegCore/napari_plugin.py
package/PartSegCore/project_info.py
package/PartSegCore/register.py
package/PartSegCore/segmentation_info.py
package/PartSegCore/state_store.py
package/PartSegCore/universal_const.py
package/PartSegCore/utils.py
package/PartSegCore/analysis/__init__.py
package/PartSegCore/analysis/algorithm_description.py
package/PartSegCore/analysis/analysis_utils.py
package/PartSegCore/analysis/calculate_pipeline.py
package/PartSegCore/analysis/calculation_plan.py
package/PartSegCore/analysis/io_utils.py
package/PartSegCore/analysis/load_functions.py
package/PartSegCore/analysis/measurement_base.py
package/PartSegCore/analysis/measurement_calculation.py
package/PartSegCore/analysis/save_functions.py
package/PartSegCore/analysis/save_hooks.py
package/PartSegCore/analysis/batch_processing/__init__.py
package/PartSegCore/analysis/batch_processing/batch_backend.py
package/PartSegCore/analysis/batch_processing/parallel_backend.py
package/PartSegCore/color_image/__init__.py
package/PartSegCore/color_image/base_colors.py
package/PartSegCore/color_image/color_data.py
package/PartSegCore/color_image/color_image_base.py
package/PartSegCore/color_image/color_image_cython.pyx
package/PartSegCore/image_transforming/__init__.py
package/PartSegCore/image_transforming/interpolate_image.py
package/PartSegCore/image_transforming/swap_time_stack.py
package/PartSegCore/image_transforming/transform_base.py
package/PartSegCore/interpolation/__init__.py
package/PartSegCore/interpolation/bilinear_interpolation.c
package/PartSegCore/interpolation/bilinear_interpolation.pyx
package/PartSegCore/interpolation/cubic_interpolation.pyx
package/PartSegCore/interpolation/setup.py
package/PartSegCore/mask/__init__.py
package/PartSegCore/mask/algorithm_description.py
package/PartSegCore/mask/history_utils.py
package/PartSegCore/mask/io_functions.py
package/PartSegCore/multiscale_opening/__init__.py
package/PartSegCore/multiscale_opening/mso.h
package/PartSegCore/multiscale_opening/mso_bind.pyx
package/PartSegCore/multiscale_opening/my_queue.h
package/PartSegCore/plugins/__init__.py
package/PartSegCore/segmentation/__init__.py
package/PartSegCore/segmentation/algorithm_base.py
package/PartSegCore/segmentation/border_smoothing.py
package/PartSegCore/segmentation/mu_mid_point.py
package/PartSegCore/segmentation/noise_filtering.py
package/PartSegCore/segmentation/restartable_segmentation_algorithms.py
package/PartSegCore/segmentation/segmentation_algorithm.py
package/PartSegCore/segmentation/threshold.py
package/PartSegCore/segmentation/watershed.py
package/PartSegCore/sphinx/__init__.py
package/PartSegCore/sphinx/auto_parameters.py
package/PartSegCore/sprawl_utils/__init__.py
package/PartSegCore/sprawl_utils/distance_utils.pxd
package/PartSegCore/sprawl_utils/euclidean_cython.pyx
package/PartSegCore/sprawl_utils/euclieadn.py
package/PartSegCore/sprawl_utils/find_split.py
package/PartSegCore/sprawl_utils/fuzzy_distance.pyx
package/PartSegCore/sprawl_utils/global_consts.h
package/PartSegCore/sprawl_utils/my_queue.h
package/PartSegCore/sprawl_utils/path_sprawl_cython.pyx
package/PartSegCore/sprawl_utils/put_borders_in_queue.pyx
package/PartSegCore/sprawl_utils/sprawl_utils.pyx
package/PartSegImage/__init__.py
package/PartSegImage/image.py
package/PartSegImage/image_reader.py
package/PartSegImage/image_writer.py
package/PartSegImage/tifffile_fixes.py
package/tests/conftest.py
package/tests/test_analysis_batch.py
package/tests/test_base.py
package/tests/test_class_generator.py
package/tests/test_coloring.py
package/tests/test_image_adjustment.py
package/tests/test_io.py
package/tests/test_mask_create.py
package/tests/test_mask_partition.py
package/tests/test_measurements.py
package/tests/test_mso.py
package/tests/test_pipeline.py
package/tests/test_segmentation.py
package/tests/test_segmentation_proceses.py
package/tests/test_smooth.py
package/tests/test_data/calculation_plan_0.9.2.3.json
package/tests/test_data/measurements_profile.json
package/tests/test_data/segment_profile_0.9.2.3.json
package/tests/test_image/__init__.py
package/tests/test_image/test_image.py
package/tests/test_image/test_image_reader.py
package/tests/test_image/test_image_writer.py
package/tests/test_qt_part/__init__.py
package/tests/test_qt_part/conftest.py
package/tests/test_qt_part/test_analysis.py
package/tests/test_qt_part/test_base.py
package/tests/test_qt_part/test_channel_control.py
package/tests/test_qt_part/test_colormap_create.py
package/tests/test_qt_part/test_common_gui.py
package/tests/test_qt_part/test_io.py
package/tests/test_qt_part/test_label_choose.py
package/tests/test_qt_part/test_main_windows.py
package/tests/test_qt_part/test_sentry.py
package/tests/test_qt_part/test_settings.py
package/tests/test_qt_part/test_window_import.py
requirements/requirements_ci.txt
requirements/requirements_dev.txt
requirements/requirements_pyinstaller.in
requirements/requirements_pyinstaller.txt
requirements/requirements_test.txt