Metadata-Version: 2.1
Name: biomass
Version: 0.7.2
Summary: A Python Framework for Modeling and Analysis of Signaling Systems
Home-page: https://github.com/biomass-dev/biomass
Author: Hiroaki Imoto
Author-email: himoto@protein.osaka-u.ac.jp
Maintainer: Hiroaki Imoto
Maintainer-email: himoto@protein.osaka-u.ac.jp
License: Apache 2.0
Download-URL: https://github.com/biomass-dev/biomass/releases
Project-URL: Documentation, https://biomass-core.readthedocs.io/en/latest/
Project-URL: Source Code, https://github.com/biomass-dev/biomass
Project-URL: Bug Tracker, https://github.com/biomass-dev/biomass/issues
Keywords: systems,biology,kinetic,modeling,biochemical,reaction,network,simulation,ode
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Provides-Extra: dev
Provides-Extra: docs
License-File: LICENSE

<br>
<p align="center">
    <a href="https://biomass-core.readthedocs.io/en/latest">
        <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400">
    </a>
</p>

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_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python.

- **Documentation:** https://biomass-core.rtfd.io
- **Source code:** https://github.com/biomass-dev/biomass
- **Bug reports:** https://github.com/biomass-dev/biomass/issues
- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html

It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.

## Installation

The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass).

```shell
$ pip install biomass
```

BioMASS supports Python 3.7 or newer.

## References

- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878

- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944

## Author

[Hiroaki Imoto](https://github.com/himoto)

## License

[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE)


