Metadata-Version: 2.1
Name: bamAlignCleaner
Version: 0.1
Summary: Removes unaligned references in BAM alignment file
Home-page: https://github.com/maxibor/bamAlignCleaner
License: MIT
Platform: UNKNOWN
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: pysam
Requires-Dist: tqdm
Requires-Dist: click

# bamAlignCleaner 

A simple utility tool to remove references with no aligned reads in a `bam`/`cram` file

## Installation

```bash
pip install bamaligncleaner 
```

## Usage

```bash
bamAlignCleaner -o output.bam input.bam
```


