setup.py
TractSeg.egg-info/PKG-INFO
TractSeg.egg-info/SOURCES.txt
TractSeg.egg-info/dependency_links.txt
TractSeg.egg-info/not-zip-safe
TractSeg.egg-info/requires.txt
TractSeg.egg-info/top_level.txt
bin/ExpRunner
bin/Tracking
bin/TractSeg
bin/Tractometry
bin/calc_FA
bin/download_all_pretrained_weights
bin/flip_peaks
bin/get_image_spacing
bin/plot_tractometry_results
bin/remove_negative_values
bin/rotate_bvecs
tests/__init__.py
tests/test_end_to_end.py
tests/test_functions.py
tractseg/__init__.py
tractseg/python_api.py
tractseg/data/DLDABG_standalone.py
tractseg/data/__init__.py
tractseg/data/check_data.py
tractseg/data/custom_transformations.py
tractseg/data/data_loader_inference.py
tractseg/data/data_loader_precomputed.py
tractseg/data/data_loader_training.py
tractseg/data/data_loader_training_3D.py
tractseg/data/dataset_specific_utils.py
tractseg/data/preprocessing.py
tractseg/data/spatial_transform_custom.py
tractseg/data/spatial_transform_peaks.py
tractseg/data/subjects.py
tractseg/experiments/__init__.py
tractseg/experiments/base.py
tractseg/experiments/dm_reg.py
tractseg/experiments/dm_reg_lowres.py
tractseg/experiments/endings_seg.py
tractseg/experiments/endings_seg_lowres.py
tractseg/experiments/peak_reg.py
tractseg/experiments/peak_reg_angle.py
tractseg/experiments/peak_reg_lowres.py
tractseg/experiments/tract_seg.py
tractseg/experiments/tract_seg_lowres.py
tractseg/experiments/base_legacy/__init__.py
tractseg/experiments/base_legacy/dm_reg_legacy.py
tractseg/experiments/base_legacy/dm_reg_lowres_legacy.py
tractseg/experiments/base_legacy/endings_seg_legacy.py
tractseg/experiments/base_legacy/endings_seg_lowres_legacy.py
tractseg/experiments/base_legacy/peak_reg_legacy.py
tractseg/experiments/base_legacy/peak_reg_lowres_legacy.py
tractseg/experiments/base_legacy/tract_seg_legacy.py
tractseg/experiments/base_legacy/tract_seg_lowres_legacy.py
tractseg/experiments/custom/DmReg_All_BXTensAg_aPTX.py
tractseg/experiments/custom/DmReg_All_BXTensAg_aPTX_platLR.py
tractseg/experiments/custom/DmReg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/custom/DmReg_All_BXTensAg_aPTX_platLR20_noMiss.py
tractseg/experiments/custom/DmReg_All_BXTensAg_aPTX_platLRMax.py
tractseg/experiments/custom/DmReg_All_P_TEST.py
tractseg/experiments/custom/DmReg_P_TEST.py
tractseg/experiments/custom/EndingsSeg.py
tractseg/experiments/custom/PeaksPart1.py
tractseg/experiments/custom/PeaksPart1_AngL.py
tractseg/experiments/custom/PeaksPart1_AngL_xyz.py
tractseg/experiments/custom/PeaksPart1_TEST.py
tractseg/experiments/custom/PeaksPart1_w10.py
tractseg/experiments/custom/PeaksPart1_w10_800.py
tractseg/experiments/custom/PeaksPart1_w10_xyz.py
tractseg/experiments/custom/PeaksPart1_w20.py
tractseg/experiments/custom/PeaksPart2.py
tractseg/experiments/custom/PeaksPart3.py
tractseg/experiments/custom/PeaksPart4.py
tractseg/experiments/custom/TractSeg.py
tractseg/experiments/custom/TractSeg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/custom/TractSeg_BXTensAg.py
tractseg/experiments/custom/TractSeg_DO.py
tractseg/experiments/custom/TractSeg_HR_DEFAULT.py
tractseg/experiments/custom/TractSeg_TEST.py
tractseg/experiments/custom/TractSeg_cu9.py
tractseg/experiments/custom/TractSeg_noDO.py
tractseg/experiments/custom/TractSeg_pretrained_DEFAULT.py
tractseg/experiments/custom/__init__.py
tractseg/experiments/custom/my_custom_experiment.py
tractseg/experiments/old/TractSeg_BXTens_aPTX_CST.py
tractseg/experiments/old/TractSeg_BXTens_aPTX_CST_DAug.py
tractseg/experiments/old/__init__.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_Blur2Noise2.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_Blur2Noise2Elas.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_blur2.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_blur3.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_elas.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_noise2.py
tractseg/experiments/old/Daug/TractSeg_HR_DAugH_noise3.py
tractseg/experiments/old/Daug/TractSeg_HR_DAug_Fast_TEST.py
tractseg/experiments/old/Daug/TractSeg_HR_noDAug.py
tractseg/experiments/old/Daug/__init__.py
tractseg/experiments/old/DmReg/DmReg_All_BXTensS_aPTX_BN_platLR.py
tractseg/experiments/old/DmReg/DmReg_All_BXTensS_aPTX_platLR.py
tractseg/experiments/old/DmReg/DmReg_All_BXTensS_aPTX_platLRMax.py
tractseg/experiments/old/DmReg/DmReg_All_BXTens_aPTX.py
tractseg/experiments/old/DmReg/DmReg_All_BXTens_aPTX_lr002.py
tractseg/experiments/old/DmReg/DmReg_All_BXTens_aPTX_lr01.py
tractseg/experiments/old/DmReg/DmReg_All_BXTens_aPTX_noDAug.py
tractseg/experiments/old/DmReg/DmReg_All_BXTens_aPTX_stepLR.py
tractseg/experiments/old/DmReg/DmReg_BXTensS_aPTX_ep1000.py
tractseg/experiments/old/DmReg/DmReg_BXTensS_aPTX_ep1000_BN.py
tractseg/experiments/old/DmReg/DmReg_BXTensS_aPTX_ep1000_platLR.py
tractseg/experiments/old/DmReg/DmReg_BXTensS_aPTX_ep1000_platLRMax.py
tractseg/experiments/old/DmReg/DmReg_BXTens_aPTX.py
tractseg/experiments/old/DmReg/DmReg_BXTens_aPTX_ep1000.py
tractseg/experiments/old/DmReg/DmReg_BXTens_aPTX_ep1000_p1.py
tractseg/experiments/old/DmReg/DmReg_Test.py
tractseg/experiments/old/DmReg/DmReg_aPTX_ep1000_p1.py
tractseg/experiments/old/DmReg/__init__.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXAg_aPTX_platLR20_5slices.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXTensAg_aPTX_platLR.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXTensAg_aPTX_platLR20_5slices.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXTensAg_aPTX_platLR20_noMiss.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_BXTensAg_aPTX_platLRMax.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_All_P_TEST.py
tractseg/experiments/old/DmReg_5slices_misc/DmReg_P_TEST.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_BXTensAg.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_270g.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_5slices_p02.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_5slices_p1.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_CSDBX.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_CSDBX_platLR.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_DEFAULT.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_TEST.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_cu10.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_HR_cu9.py
tractseg/experiments/old/DmReg_5slices_misc/TractSeg_pretrained_DEFAULT.py
tractseg/experiments/old/DmReg_5slices_misc/__init__.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LS_w0.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LS_w10.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LS_w10_400.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LS_w10_800.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LS_w5.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart1_LossSel_ep500.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart2_LossSel_ep500.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart2_LossSel_ep500_cu9.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart3_LossSel_ep500.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart3_LossSel_ep500_cu9.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart4_LossSel_ep500.py
tractseg/experiments/old/Peaks_optimization_2019/PeaksPart4_LossSel_ep500_cu9.py
tractseg/experiments/old/Peaks_optimization_2019/__init__.py
tractseg/experiments/old/TractSeg_BX/TractSeg_All_BXTens_aPTX.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXPeaks.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTensAg_aPTX.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTensAg_aPTX_BN.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTensAg_aPTX_BN_platLR.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTensS.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_aPTX.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_aPTX_p1.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_aPTX_resampLegacy.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_aPTX_resampLegacy_p1.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_aPTX_resamp_p1.py
tractseg/experiments/old/TractSeg_BX/TractSeg_BXTens_p1.py
tractseg/experiments/old/TractSeg_BX/__init__.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_270g.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_270g_Tens.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_Tens.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_platLR.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_platLR_BN.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_platLR_lr002.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_platLR_thr05.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_stepLR.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_stepLR5_lr002.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_HR_stepLR_lr002.py
tractseg/experiments/old/TractSeg_CSD/TractSeg_aPTX.py
tractseg/experiments/old/TractSeg_CSD/__init__.py
tractseg/experiments/pretrained_models/DmReg.py
tractseg/experiments/pretrained_models/DmReg_All_BXTensAg_aPTX_platLR20_noMiss.py
tractseg/experiments/pretrained_models/DmReg_All_xtract_PeakRot4.py
tractseg/experiments/pretrained_models/EndingsSeg_PeakRot4.py
tractseg/experiments/pretrained_models/Peaks_AngL.py
tractseg/experiments/pretrained_models/TractSeg72_888.py
tractseg/experiments/pretrained_models/TractSeg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/pretrained_models/TractSeg_All_xtract_PeakRot4.py
tractseg/experiments/pretrained_models/TractSeg_BXTensAg.py
tractseg/experiments/pretrained_models/TractSeg_HR_3D_DAug.py
tractseg/experiments/pretrained_models/TractSeg_PeakRot4.py
tractseg/experiments/pretrained_models/TractSeg_T1_125mm_DAugAll.py
tractseg/experiments/pretrained_models/TractSeg_T1_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/__init__.py
tractseg/experiments/pretrained_models/old_1/EndingsSeg_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/old_1/Peaks20_12g90g270g_125mm.py
tractseg/experiments/pretrained_models/old_1/Peaks20_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_1/Peaks20_270g_125mm.py
tractseg/experiments/pretrained_models/old_1/Peaks_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_1/TractSeg_12g90g270g_125mm_DAugAll_Dropout.py
tractseg/experiments/pretrained_models/old_1/__init__.py
tractseg/experiments/pretrained_models/old_2/DmReg_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/old_2/EndingsSeg_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_2/TractSeg_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_2/TractSeg_12g90g270g_125mm_DS_DAugAll_Dropout.py
tractseg/experiments/pretrained_models/old_2/__init__.py
tractseg/libs/AFQ_MultiCompCorrection.py
tractseg/libs/__init__.py
tractseg/libs/create_endpoints_mask_with_clustering.py
tractseg/libs/data_utils.py
tractseg/libs/direction_merger.py
tractseg/libs/exp_utils.py
tractseg/libs/fiber_utils.py
tractseg/libs/img_utils.py
tractseg/libs/metric_utils.py
tractseg/libs/peak_utils.py
tractseg/libs/plot_utils.py
tractseg/libs/preprocessing.py
tractseg/libs/pytorch_einsum.py
tractseg/libs/pytorch_utils.py
tractseg/libs/system_config.py
tractseg/libs/tracking.py
tractseg/libs/tractometry.py
tractseg/libs/tractseg_prob_tracking.py
tractseg/libs/trainer.py
tractseg/libs/utils.py
tractseg/libs/vtk_utils.py
tractseg/models/__init__.py
tractseg/models/base_model.py
tractseg/models/unet3d_pytorch_deepsup_sm.py
tractseg/models/unet_pytorch.py
tractseg/models/unet_pytorch_deepsup.py
tractseg/models/unet_pytorch_deepsup_test.py
tractseg/resources/MNI_FA_template.nii.gz
tractseg/resources/__init__.py
tractseg/resources/random_forest_peak_orientation_detection.pkl