setup.py
OLCTools.egg-info/PKG-INFO
OLCTools.egg-info/SOURCES.txt
OLCTools.egg-info/dependency_links.txt
OLCTools.egg-info/top_level.txt
SPAdesPipeline/CHAS.py
SPAdesPipeline/GeneSeekr.py
SPAdesPipeline/__init__.py
SPAdesPipeline/basicAssembly.py
SPAdesPipeline/bowtie.py
SPAdesPipeline/compress.py
SPAdesPipeline/createobject.py
SPAdesPipeline/depth.py
SPAdesPipeline/errorcorrection.py
SPAdesPipeline/fastqCreator.py
SPAdesPipeline/fastqmover.py
SPAdesPipeline/fileprep.py
SPAdesPipeline/getmlst.py
SPAdesPipeline/mMLST.py
SPAdesPipeline/mash.py
SPAdesPipeline/metadataReader.py
SPAdesPipeline/metadataprinter.py
SPAdesPipeline/offhours.py
SPAdesPipeline/plasmidfinder.py
SPAdesPipeline/prodigal.py
SPAdesPipeline/prophages.py
SPAdesPipeline/quality.py
SPAdesPipeline/quaster.py
SPAdesPipeline/reporter.py
SPAdesPipeline/runMetadata.py
SPAdesPipeline/serotype.py
SPAdesPipeline/sistr.py
SPAdesPipeline/sixteenS.py
SPAdesPipeline/spadesRun.py
SPAdesPipeline/univec.py
SPAdesPipeline/versions.py
SPAdesPipeline/vtyper.py
accessoryFunctions/__init__.py
accessoryFunctions/accessoryFunctions.py
coregenome/__init__.py
coregenome/annotate.py
coregenome/core.py
coregenome/coretyper.py
metagenomeFilter/__init__.py
metagenomeFilter/automateCLARK.py
metagenomeFilter/filtermetagenome.py