PHASEfilter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
PHASEfilter/bin/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
PHASEfilter/bin/copy_raw_data_example_phasefilter.py,sha256=23gfUkC4D31sox07fe8iH47AdCT2WAH1YGAwUPdvLTk,3071
PHASEfilter/bin/install_phasefilter_dependencies.sh,sha256=kY6pVnPAhU38_BqZ3_UIxhIKV-CoZsjstNb0DzVkhTc,1485
PHASEfilter/bin/make_alignment.py,sha256=DVFLdwEjC6muzspUHJH8Qhwa3WxEgSgfOikIJ1Ua1Og,6963
PHASEfilter/bin/phasefilter.py,sha256=npRD29Qd-ON5Q6qoTiDtdPtl2Y8ZGUhF4Js6KYJzBhg,10871
PHASEfilter/bin/phasefilter_single.py,sha256=Ufa7gEeN-G3ghhPap86Y8e0RupVBmg6cepufiaIHfcA,9120
PHASEfilter/bin/reference_statistics.py,sha256=Lousr8M1Pq-PkBXiYYvVTM6yeAuMYjQWLGs0IjG63lw,3021
PHASEfilter/bin/synchronize_genomes.py,sha256=AwWxCy0duhLoPj9qTB-SnWU9WL88yy_Claz9BNE9Bx4,7018
PHASEfilter/lib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
PHASEfilter/lib/constants/__init__.py,sha256=CBHcKWsj4aR85l4xokxYoeqyJpXWNPY3B6EQFDzMAg0,45
PHASEfilter/lib/constants/constants.py,sha256=ssJURAmHpdhVlijhUbGmcKCvA239J98KQ4VexOBEQnY,114
PHASEfilter/lib/constants/version.py,sha256=RGk6hoG41LVC4-iRzj_oblVIKQ5OIQIJHB85VkKwhTo,798
PHASEfilter/lib/process/__init__.py,sha256=bN3Vgn2baYTDTPhv6hJudhqqSmnWA1b2cjmVFCmmvFw,46
PHASEfilter/lib/process/process_genomes.py,sha256=KsiAP9hoVkMzpsB6mupmMneZjGJEf6tRYDY0NnPN8Dk,10246
PHASEfilter/lib/process/process_references.py,sha256=yj866hiqThp0NhWyuzfMxm397K1qm7RoHJ0oIqjdBsU,10188
PHASEfilter/lib/utils/__init__.py,sha256=bN3Vgn2baYTDTPhv6hJudhqqSmnWA1b2cjmVFCmmvFw,46
PHASEfilter/lib/utils/blast_two_sequences.py,sha256=94YKD92mqX7FV4EmdgJSSeMIrvmu2nP7ygNfO6RlGEM,29532
PHASEfilter/lib/utils/chain.py,sha256=xUGBvgiLqL28369ELSiL2t3f6pR9XNyzXr5VPhU4eio,1720
PHASEfilter/lib/utils/lastz_two_sequences.py,sha256=2SBZVLy5BQo9akk0KvMzOLlREhVqI_UJMRI-S0dJw1M,5215
PHASEfilter/lib/utils/lift_over_simple.py,sha256=oBkAwXfc6f5EF0YOqOqbrR3dvQY7gYj2gd0yGEG53FI,48639
PHASEfilter/lib/utils/read_gff.py,sha256=892yV6hgeJCIt3-BuT3G0QAXayf8mEk83FtS7uh0xtI,3704
PHASEfilter/lib/utils/reference.py,sha256=1lJzzuuIYplE60advXh-KYizFpdNruOWL9327dcgZpE,7668
PHASEfilter/lib/utils/run_extra_software.py,sha256=n8brd9CSOq1E9yuKQWYuysjkeDuhx_qt15RwNFhpiNg,7071
PHASEfilter/lib/utils/software.py,sha256=O8ENjXDjmax-Xbqjgd_vtELwpFzegolibCrkl5emtL4,6823
PHASEfilter/lib/utils/testing_software.py,sha256=uOP2LFcLkyr2o0byE4GYWZhJrOL7YeZDEtntYhnLREw,3736
PHASEfilter/lib/utils/util.py,sha256=Pgn-pEkgddzRdM9y6u0mqennHMn_hy3suIJWTWfuI8c,21626
PHASEfilter/lib/utils/vcf_process.py,sha256=tJl6yKVSlKo9C04Wr0LJYU0yL4LCoYfKbIJyGDuxI74,24889
PHASEfilter/tests/__init__.py,sha256=8YVU6O0iQkZ7ZA7BGZMNKBOpS4fUSRRYOXXCViGFwRk,150
PHASEfilter/tests/test_chain.py,sha256=6qfk054uB1jrH7ReCZayuhsS5Gi3y1mtU4LwO6mwt4A,7898
PHASEfilter/tests/test_lift_over.py,sha256=dTsnjtDC7vgzQdSyQarNCVDJZ7-q8v_Fh9ps4SF9RCA,19261
PHASEfilter/tests/test_process_genomes.py,sha256=N-NByqAydZi3obRxAwQYl1FSenMiGD-HEfhpeUHbIj0,9338
PHASEfilter/tests/test_reference.py,sha256=KwY95KHRordhYIbzlj-R8P-sJjn6t8xS09xPQ02DxHU,4147
PHASEfilter/tests/test_run_extra_software.py,sha256=Q8Kce7llIH9B-qzNZoAOPJQhhqZD9wZsHJVIabxJ6tQ,4232
PHASEfilter/tests/test_software.py,sha256=t5qREaV-iwl3QmzIxUSEnNp_LH8U4WxAg0HGGLb9-XA,9020
PHASEfilter/tests/test_synchronization.py,sha256=Q8s70XjfIx-4E_NYYVEtwKJgGWQTjiAn5V1xVG4Zwmc,8544
PHASEfilter/tests/test_utils.py,sha256=WRHwLciuD_uTuMP9VgQ4w1OhYhyK3LYzwq1u3lq-_n8,7825
PHASEfilter/tests/test_vcf.py,sha256=igC1LH-vuImxiyKaRtjnZJDh0bWK2nERfj7k4R-tve8,25679
PHASEfilter/tests/files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
PHASEfilter/tests/files/gff3/file_result_test_gff.gff3,sha256=xE_R9DVFSrj91XfSS1Z79EPMu7S2GGLvSjpT9OoKhho,2119
PHASEfilter/tests/files/gff3/file_result_translate_gff.gff3,sha256=m9iEpdH_S3TfMKG5boUpGluUKOZlJVpc5Jy-Oi19hxM,2402
PHASEfilter/tests/files/gff3/to_translate.gff,sha256=x5I7nMoZLSiq11GNzg3gf6Im9lFD4ic8SHO6gWyuFLc,2167
PHASEfilter/tests/files/real_raw_data/Assembly22_hapA_To_Assembly22_hapB.over.chain,sha256=sFC1omfh56hpT3zfxU6_7KTTCUdorns3gzWHPA200Ag,56758
PHASEfilter/tests/files/real_raw_data/Assembly22_hapB_To_Assembly22_hapA.over.chain,sha256=0Qqq-ko0n7r0NdWvmiQb2uIzmsmgOqyrtAhnlBUSP3k,56316
PHASEfilter/tests/files/real_raw_data/Ca22chr7A_C_albicans_SC5314.fasta,sha256=O4kimut8WZ5NTl4u_B70ygR3zZ5Zld06rgqkq07A9SI,976761
PHASEfilter/tests/files/real_raw_data/Ca22chr7B_C_albicans_SC5314.fasta,sha256=0OuBHGbh6cjyvPLXXliyxKmZGLyTso4w37NRhcjiuUs,976773
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7A_indels.vcf.gz,sha256=YGzJX5yGtVjCsFwWeimHFa94NXjxIL1KOiCPI74wJAE,22797
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7A_indels.vcf.gz.tbi,sha256=sFe3RScjoLqkG_FZhh4GXUoI4hCKhS-7TEYLZT7Bezo,469
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7A_snps.gff3,sha256=kUz5AikReMF072aBpfLEqjQKSXWtT_FejXWuJRJcFhU,226060
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7A_snps.vcf.gz,sha256=QiMe5Z0iSlAzo1Mbu49-zW--EGlWwunoHnUKtg9cgu8,107074
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7A_snps.vcf.gz.tbi,sha256=ctFmzeJ3IWsqqyhWbV8Mr4CD81hVgZdl8GFNA0lh4Lw,442
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7B_indels.vcf.gz,sha256=bI8TA2P4PWmgZFCC_jDPlUEQo4TyhnnXz89CrvWxQmM,23669
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7B_indels.vcf.gz.tbi,sha256=N2xkFuT_hdl0PKstaqcEzxHJ4ffqOHWhFrYA8bzxjZE,460
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7B_snps.vcf.gz,sha256=H2hs2svSWRJvvKgDDk1Wrh-EemTzUsHG_ZAQo4MgtbU,114615
PHASEfilter/tests/files/real_raw_data/T1_Fluc_7B_snps.vcf.gz.tbi,sha256=FPZC7IFgRkQH7iSdY2QpOVprh0aNqcx5A7QUMcXNA4Y,456
PHASEfilter/tests/files/real_raw_data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
PHASEfilter/tests/files/ref/Ca22chr2A_C_albicans_SC5314.fasta.gz,sha256=g6hx8haJHGGJvFlFwGdw4NpPbdFE6Tb23UiFMG0JuHs,679229
PHASEfilter/tests/files/ref/Ca22chr2B_C_albicans_SC5314.fasta.gz,sha256=RWGVAC2hb0jEVZ_l4hfyBQSEZgQAImL8RwXPpgFrGCM,679296
PHASEfilter/tests/files/ref/Ca22chr6A_C_albicans_SC5314.fasta.gz,sha256=fEnb7VdXvt9IKzxkv2v2ITSVKgaqLdU9BXPcW-kM4Bo,313804
PHASEfilter/tests/files/ref/Ca22chr6B_C_albicans_SC5314.fasta.gz,sha256=bqWPeuFn1c4fkNMfxlc42nUKCsCh3W15LcVu8b1MFD0,313669
PHASEfilter/tests/files/ref/alignment_file.txt,sha256=qvfDjC8h1hbxVHksk2myC7y9uSra5ryBHDLRNylpiDo,4775
PHASEfilter/tests/files/ref/cigar_first_file_a_first_file_b.txt,sha256=I7vg3XezQZdPAI7rg24WC5aM-7Q6ZIfsAjLweRAwvcw,35
PHASEfilter/tests/files/ref/expect_file_align_clustalx.fasta,sha256=WHQC-4uyva51m9GdYwYkHiD7rpGtV2D5BIivQ0uQqr8,6780
PHASEfilter/tests/files/ref/first_file_a.fasta,sha256=1O4IValxSCjvCQlZIbBMsbw1bRIQQyiwj2L2jP5I4zo,1225
PHASEfilter/tests/files/ref/first_file_a.fasta.fai,sha256=PdEHYStXvNDIUBG_GSuxc51WdTR925m7eobQgQrFBDs,15
PHASEfilter/tests/files/ref/first_file_a_original.fasta,sha256=IxemVeg8oIyalM-46jFF9VpE17cRjLToUZvLMGQOQaw,1256
PHASEfilter/tests/files/ref/first_file_b.fasta,sha256=oQzvjPqu_Rt7gE08ZE3AaCFZQ64316ArpAt8ccOaiT4,1262
PHASEfilter/tests/files/ref/first_file_b.fasta.fai,sha256=jDt6n-n42i45LAobNR4yqZv1DfKLP2N8uU0BdabGGpY,15
PHASEfilter/tests/files/ref/first_file_b_original.fasta,sha256=wKhh0WMj_u3qry0VAg-dEBGhA_NoSVRq3z00XukG2_4,1317
PHASEfilter/tests/files/ref/ref_ca22_1A.fasta,sha256=0Bci-mMsZHLkoNio7VgZKycVsQmfa3q3uyZ3KhqJPk4,70980
PHASEfilter/tests/files/ref/ref_ca22_1A.fasta.fai,sha256=Be0fJE5SajlLSQ3tHk5w1U022MpU1bhh2NKDBVR29tI,89
PHASEfilter/tests/files/ref/ref_ca22_1A_multiple.fasta,sha256=1jsagoChgpS-Oi20odKXWcIn9CESstZvFX2qKS9vuyM,97941
PHASEfilter/tests/files/ref/ref_ca22_1A_multiple.fasta.fai,sha256=Be0fJE5SajlLSQ3tHk5w1U022MpU1bhh2NKDBVR29tI,89
PHASEfilter/tests/files/ref/ref_ca22_1B.fasta,sha256=zbNT4P8SH-LMLpr6tMx2JTl3AyTQQEawiuWuz7LrXbA,70980
PHASEfilter/tests/files/ref/ref_ca22_1B.fasta.fai,sha256=FiavCfa_gRLS9cjjRgZZkVNF5oO9Jf_G-oZP90b_HkM,89
PHASEfilter/tests/files/ref/ref_ca22_1B_multiple.fasta,sha256=oq6ze4XADUhdTyYYQe266gtload1ML-8o_PK7vXAdB8,101632
PHASEfilter/tests/files/ref/ref_ca22_1B_multiple.fasta.fai,sha256=FiavCfa_gRLS9cjjRgZZkVNF5oO9Jf_G-oZP90b_HkM,89
PHASEfilter/tests/files/ref/second_file_a.fasta,sha256=Qj3Sz2ytFv8sJ5qNlUAoN-sNRiPr6BnW9umKkaX2o48,96
PHASEfilter/tests/files/ref/second_file_a.fasta.fai,sha256=toDI1SbGV9oKOtu28RDfVTvJqZP8a3RYCVvmVNcclfU,13
PHASEfilter/tests/files/ref/second_file_b.fasta,sha256=ihSW0XTUsL4Lhj75lTvl8LDHZRMh02oMHTo1lmRIKPs,192
PHASEfilter/tests/files/ref/second_file_b.fasta.fai,sha256=NbXYuSYuyrV0Iv7Uy1J0BgcOqaL6ZsqcBz5dAKwrVdc,14
PHASEfilter/tests/files/referenceSaccharo/S01.chrX.fasta,sha256=5WVGL8IU6f7d5A3_3KkxiEckNJxFEhkFvXr1ce7KGvU,756131
PHASEfilter/tests/files/referenceSaccharo/S01.chrX.fasta.fai,sha256=bI3UfYYsNb57TOyOUOBuX2mNvdRybHLGG_h6AjAJWV0,25
PHASEfilter/tests/files/referenceSaccharo/S01.chrXVI.fa,sha256=cV5IEIlwJJw2GkXAcsRLweZJaEgyVVxxUsX-MxpiG1w,972442
PHASEfilter/tests/files/referenceSaccharo/S01.chrXVI.fa.fai,sha256=evmV6BFz61aurPNco5HofPt3I2yRBPE6-V8G4u4Xark,22
PHASEfilter/tests/files/referenceSaccharo/S01.fa,sha256=SVpa-jjVLTqlYPWLC0mmuSs3P-Ydm8stNxXsGkUh1r0,972455
PHASEfilter/tests/files/referenceSaccharo/S01_chrX_small.fasta,sha256=ajzNT29m7cFJ7NdnDMzASAH4bULVPCU4DqOlj47WTSo,2419
PHASEfilter/tests/files/referenceSaccharo/S01_chrX_small.fasta.fai,sha256=WXkrpKcbO1Va5lfvSDSP-YXlyvkbQ63-0rnaWHm1nmg,18
PHASEfilter/tests/files/referenceSaccharo/S228C.chrXVI.fa,sha256=O-D1pHE13dq7qTji81B37Oyl203eABZrIc4nmVEH_XI,961618
PHASEfilter/tests/files/referenceSaccharo/S228C.chrXVI.fa.fai,sha256=F4BXaradkN_AQf3bPooxL13kD1sqy15hyERFVcLSqgE,22
PHASEfilter/tests/files/referenceSaccharo/chrX.fasta,sha256=2HaoOTzmLnty3d2mPgeush4ZtQb-nUj3JARY6rnGhZ8,756411
PHASEfilter/tests/files/referenceSaccharo/chrX.fasta.fai,sha256=yngvYFyfwI_C5yfz-mv5QaRZJ2nuc-vJY7iI_fd3qBE,20
PHASEfilter/tests/files/referenceSaccharo/chrX_small.fasta,sha256=4auvMya0C0cOf1ObRr8rbrHE5zZBl44lxxaQtxMIM-0,2632
PHASEfilter/tests/files/referenceSaccharo/chrX_small.fasta.fai,sha256=0Cgt23NViKxHnTS7uK9G5M_H8SRfz2I6Nu0VuugPO-Y,18
PHASEfilter/tests/files/referenceSaccharo/out_new_ref_saccharo_X.fasta,sha256=eJGslgsQp-4rWTYwDNv_2nDj5jOqC752JChvUY9jGaM,758186
PHASEfilter/tests/files/referenceSaccharo/out_sync_saccharo.txt,sha256=9qWrCyB8y88iRWuVbDKAnRQyuMponY4cu4RKrLeUh1w,341
PHASEfilter/tests/files/referenceSaccharo/out_sync_saccharo_X.txt,sha256=QJBgxwmYD3pttl2bGiovCX2ZcI7Aj0NSLa0rIakl0yY,330
PHASEfilter/tests/files/referenceSaccharo/ref_ony_for_names.fasta,sha256=JG3UnhAq6Nvi80a7M7SMy_mc6lQ_dY_MBjPQ7o4aSNM,2685
PHASEfilter/tests/files/referenceSaccharo/ref_ony_for_names.fasta.fai,sha256=cUGQbrprvgwhjWcjteEgwzVHZ11i7Zr7afNHQrvkDHg,154
PHASEfilter/tests/files/result/count_ref_ca22_1A.txt,sha256=RtD0KgJCt9zb5z1MZ2OFffzB722CnvEfeJPxfpJLkcY,249
PHASEfilter/tests/files/result/report_sync_reference.txt,sha256=0RL6JGOG1jAWTZsPIPvwGyDgs13U02U5YIOWuw3atjk,387
PHASEfilter/tests/files/software/first,sha256=g1VhVTG8CQHxVOSFqKInKvBWnU9gfCd1oHabBAGuO_g,8304
PHASEfilter/tests/files/software/first.c,sha256=v0UEMfESIRJs8MmXaIt5JpwlXUQlGWQ0bArdMIIT1ng,93
PHASEfilter/tests/files/software/fourth,sha256=XCaZ6pi31q7-xGIlM3LY4A_64_AYvOSE0YzRcOU-9H8,8304
PHASEfilter/tests/files/software/fourth.c,sha256=jP4NsBAH8L8M9abYs9xD1sfF4jWbSLaQvWxOOKltHe8,86
PHASEfilter/tests/files/software/second,sha256=u_vssynVRvAQCmm-JIkvO9sLt48m6XSQ4zJfHm8G0dU,8304
PHASEfilter/tests/files/software/second.c,sha256=eyTf571RYINo4Il8a66NGk-qXlEv3Dn8bxlAufJ4gs8,86
PHASEfilter/tests/files/software/third,sha256=CyDo_V58-uZxR81aUok56zVxnDIvZPLX3B_Ll8A06vE,8304
PHASEfilter/tests/files/software/third.c,sha256=QCL03-Q0tZ6ybwchqEOgPYNIJ96G90h02T7M88-imnY,87
PHASEfilter/tests/files/synchronize/alignment_minimap.aln,sha256=zXSOszfhNRqW6JuR6lGC45KMiPq6oFpcY8bkNmpx3No,12918
PHASEfilter/tests/files/synchronize/chrB.txt,sha256=ipk38aST8EejN_6BmziUfRXUjQHu4KDpany4uUnL8hw,6981
PHASEfilter/tests/files/vcf/A-M_S4_chrA_indel.vcf,sha256=iFZ07gCdfJ0FKXxaE6HGpSKv2mf0vXNWZRgXY2kwr3o,1017048
PHASEfilter/tests/files/vcf/A-M_S4_chrB_indel.vcf,sha256=dTGMQV5phNtMEKrQDT1N3e1fnVA0HspYjlk67EZ2D_g,1021823
PHASEfilter/tests/files/vcf/chrA.vcf,sha256=L5D1yfUq9pSrw74LF0eafE_lHUNAZXrKYCHAqahxbnQ,575055
PHASEfilter/tests/files/vcf/chrB.vcf,sha256=i4OALVNHango3kj5rzbQ8I8SGB-0MW8Gjb6pJjJf7bE,575451
PHASEfilter/tests/files/vcf/test_tabix.vcf,sha256=QON_xecBj7aWJjqtg1eTSS_cJwahDDPe8o7kQcXn3g0,587411
PHASEfilter/tests/files/vcf/test_with_AF_chrA.vcf,sha256=ucoD325GI-jhO95dxoCWE-vApk-O6yOizxR410myEjQ,12941
PHASEfilter/tests/files/vcf/test_without_AF_chrA.vcf,sha256=2OR_mQCd5g84hTqudp5IZcoCMl80v--faq8sFeRf100,12795
PHASEfilter-1.1.0.data/scripts/copy_raw_data_example_phasefilter.py,sha256=ggv5wl5BnV00GnYg1kS4Nzj9TLr5zRGmF2bx7eAuiMU,3057
PHASEfilter-1.1.0.data/scripts/install_phasefilter_dependencies.sh,sha256=kY6pVnPAhU38_BqZ3_UIxhIKV-CoZsjstNb0DzVkhTc,1485
PHASEfilter-1.1.0.data/scripts/make_alignment.py,sha256=wNhV44ZU2y3IksK0DtaCZ_u5x0Ry0yw4SvAI48K3jjU,6949
PHASEfilter-1.1.0.data/scripts/phasefilter.py,sha256=96OCvOQSiohpScbCWh2IOoLdYtTtNDDUGpPqOnz5vnc,10857
PHASEfilter-1.1.0.data/scripts/phasefilter_single.py,sha256=gBL4c5sYRmA2NxJ9u7aAnVQaEYYJvsNurtyHrs_J1hk,9106
PHASEfilter-1.1.0.data/scripts/reference_statistics.py,sha256=MoIdCXDwvYcZ9zMwuu6zqHTA45oKzCYvAJycsd6ikVY,3007
PHASEfilter-1.1.0.data/scripts/synchronize_genomes.py,sha256=vHDhA1gYTCJj30pR1Gdi7w_KbKC4kLjx9dOlvTW_8l0,7004
PHASEfilter-1.1.0.dist-info/LICENSE,sha256=1gJexw7wmum7djPIEe-yIHOT_EQBOQHlmTofKymbU5U,1063
PHASEfilter-1.1.0.dist-info/METADATA,sha256=0kmZt1Tkob15To7LkO0-Oty34uKSpWx8xnxDgHxx9wg,9821
PHASEfilter-1.1.0.dist-info/WHEEL,sha256=MYFsq5fFBwF_oyJgrOoFmYYB1K6Sw7MxY-0897ZLbdM,92
PHASEfilter-1.1.0.dist-info/entry_points.txt,sha256=j0iMfhhL57dM8fhfy20i0i_EUwEdcJbWEsskjw8JDjI,399
PHASEfilter-1.1.0.dist-info/top_level.txt,sha256=PIa_4Flxpy5-saKXQR1LPFrHomzCcu-zRPYXCE_wbcY,12
PHASEfilter-1.1.0.dist-info/RECORD,,
