Metadata-Version: 2.1
Name: PyMOL-PUB
Version: 1.1
Summary: Rapid generation of high-quality structure figures for publication with PyMOL-PUB
Home-page: https://github.com/BGI-SynBio/PyMOL-PUB
Author: Haoling Zhang
Author-email: zhanghaoling@genomics.cn
License: GPL
Keywords: pymol,pymol-pub,matplotlib,structure-cluster,structure-alignment,manuscript-figure
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: pymol
Requires-Dist: pillow
Requires-Dist: biopython
Requires-Dist: matplotlib

The advancement of structural biology has increased the requirements for researchers to quickly and efficiently visualize molecular structures in silico. Meanwhile, it is also time-consuming for structural biologists to create publication-standard figures, as no useful tools can directly generate figures from structure data. Although manual editing can ensure that figures meet the standards required for publication, it requires a deep understanding of software operations and/or program call commands. Therefore, providing interfaces based on established software instead of manual editing becomes a significant necessity. We developed PyMOL-PUB, based on the original design of PyMOL, to effectively create publication-quality figures from molecular structure data. It provides functions including structural alignment methods, functional coloring schemes, conformation adjustments, and layout plotting strategies. These functions allow users to easily generate high-quality figures, demonstrate structural differences, illustrate inter-molecular interactions and predict performances of biomacromolecules.
