MANIFEST.in
README.md
setup.py
SigProfilerMatrixGenerator/__init__.py
SigProfilerMatrixGenerator/install.py
SigProfilerMatrixGenerator.egg-info/PKG-INFO
SigProfilerMatrixGenerator.egg-info/SOURCES.txt
SigProfilerMatrixGenerator.egg-info/dependency_links.txt
SigProfilerMatrixGenerator.egg-info/not-zip-safe
SigProfilerMatrixGenerator.egg-info/requires.txt
SigProfilerMatrixGenerator.egg-info/top_level.txt
SigProfilerMatrixGenerator/references/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_192_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_3072.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_3072_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DINUC.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DINUC_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_192_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_3072.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_3072_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DINUC.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DINUC_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_192_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_3072.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_3072_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DINUC.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DINUC_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_192_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_3072.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_3072_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DINUC.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DINUC_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt
SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/.DS_Store
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/matrix/__init__.py
SigProfilerMatrixGenerator/references/matrix/BRCA_bench/.DS_Store
SigProfilerMatrixGenerator/references/vcf_files/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BED/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BRCA_bench/.DS_Store
SigProfilerMatrixGenerator/references/vcf_files/BRCA_bench/BRCA_bench_SNV.txt
SigProfilerMatrixGenerator/references/vcf_files/BRCA_bench/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/SNV/BRCA_example_subs_simple.txt
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/SNV/__init__.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py
SigProfilerMatrixGenerator/scripts/__init__.py
SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py
SigProfilerMatrixGenerator/scripts/save_chrom_strings.py
SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py
SigProfilerMatrixGenerator/scripts/save_tsb_192.py
SigProfilerMatrixGenerator/scripts/sigProfilerMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/sigProfilerMatrixGeneratorFunc.py
SigProfilerMatrixGenerator/scripts/Benchmark/.DS_Store
SigProfilerMatrixGenerator/scripts/Benchmark/BRCA_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/BRCA_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py