Metadata-Version: 2.1
Name: anngtf
Version: 0.0.0
Summary: anngtf - lift annotations from a `.gtf` file to your AnnData object.
Home-page: UNKNOWN
Author: Michael E. Vinyard - Harvard University - Massachussetts General Hospital - Broad Institute of MIT and Harvard
Author-email: mvinyard@broadinstitute.org
License: MIT
Description: # anngtf
        
        [![PyPI pyversions](https://img.shields.io/pypi/pyversions/licorice.svg)](https://pypi.python.org/pypi/anngtf/)
        [![PyPI version](https://badge.fury.io/py/licorice.svg)](https://badge.fury.io/py/anngtf)
        [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
        
        Lift annotations from a **[`gtf`](https://en.wikipedia.org/wiki/Gene_transfer_format)** to your **[`adata`](https://anndata.readthedocs.io/en/stable/)** object. 
        
        ### Installation
        
        To install via pip:
        ```BASH
        pip install anngtf
        ```
        
        To install the development version: 
        ```BASH
        git clone https://github.com/mvinyard/anngtf.git
        
        cd anngtf; pip install -e .
        ```
        
        ### Example usage
        
        ```python
        import anndata
        import anngtf
        
        gtf = "/path/to/ref/hg38/refdata-cellranger-arc-GRCh38-2020-A-2.0.0/genes/genes.gtf"
        
        adata = anndata.read_h5ad("/path/to/singlecell/data/adata.h5ad")
        ag.lift_genes(adata, gtf)
        ```
        
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Programming Language :: Python :: 3.6
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >3.6.0
Description-Content-Type: text/markdown
