Metadata-Version: 2.1
Name: janis-pipelines.unix
Version: 0.11.2
Summary: Unix tools and data types for Janis
Home-page: UNKNOWN
Author: Michael Franklin, Evan Thomas, Mohammad Bhuyan
Author-email: michael.franklin@petermac.org
License: GNU
Keywords: pipelines,bioinformatics,workflows
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
Requires-Dist: janis-pipelines.core (>=0.10.7)
Provides-Extra: ci
Requires-Dist: keyring (==21.4.0) ; extra == 'ci'
Requires-Dist: setuptools ; extra == 'ci'
Requires-Dist: wheel ; extra == 'ci'
Requires-Dist: twine ; extra == 'ci'

# Janis - Unix

[![Documentation Status](https://readthedocs.org/projects/janis/badge/?version=latest)](https://janis.readthedocs.io/en/latest/tools/unix/index.html)
[![Build Status](https://travis-ci.org/PMCC-BioinformaticsCore/janis-unix.svg?branch=master)](https://travis-ci.org/PMCC-BioinformaticsCore/janis-unix)
[![PyPI version](https://badge.fury.io/py/janis-pipelines.unix.svg)](https://badge.fury.io/py/janis-pipelines.unix)

This repository contains common unix tools and data types for [Janis](https://github.com/PMCC-BioinformaticsCore/janis).

Refer to the [documentation](https://janis.readthedocs.io/en/latest/tools/unix/index.html).


## Data types

The data types are a way of encapsulating information about a particular input or output.
Some common unix data types are `CSV`, `TSV` or `TarFile`. Visit the documentation for a full list.

## Documentation

Documentation is generated on [Janis](https://github.com/PMCC-BioinformaticsCore/janis). 
To generate new documentation you will need to: 
1. Commit your changes here,
2. Update the submodule pointer on Janis,
3. Checkout Janis (recursively),
4. Run the regenerate script `janis/docs/regeneratedocumentation.py`,
5. Commit these changes and the documentation will autobuild on ReadTheDocs.


