Metadata-Version: 2.1
Name: biobrary
Version: 0.1.3
Summary: A library for biological computing works
Author-email: Benjamin Fang <benjaminfang.ol@outlook.com>
License: MIT License
Project-URL: Homepage, https://github.com/benjaminfang/biobrary
Keywords: biobrary,bioparse,tree
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: ete3>=3.1.1
Requires-Dist: numpy>=1.21.2
Requires-Dist: six>=1.15.0

# Biobrary

## Introduction
Biobrary is a python library, which contain data and methods for biological computation.

## Requirement  
* ete3
    pyqt5 is needed by ete3. you maybe need install it manually.
 

## Install  
* using pip  
`pip install biobrary --user`

* manally install  
`git clone https://github.com/benjaminfang/biobrary.git`  
`cd biobrary`  
`mv biobrary PYTHONPATH`  
where PYTHONPATH is python library searching path.

## Usage  
```
import biobrary  
dir(biobrary)  
```

## Data and Method  

* biopaser  
    * Fasta_parser  
        class for fasta file.
    * Gff_parser  
        class for gff file.


* biocondon  
    * CODON_AA  
        python dictionary of codon and amino acids.  
    * base_complement
    * start_codon
    * stop_codon



* amino_acids_mw  



* CircleNode  
    class for phylogenic tree traverse and operations. And divide tree to circle node according
    to phylogenic distance.
    
