.gitignore
INSTALL.md
LICENSE
README.md
pyproject.toml
.github/workflows/publish-pypi.yml
.github/workflows/publish-testpypi.yml
assets/img/LOGO.png
demos/run_on_hpc/.env_example
demos/run_on_hpc/README.md
demos/run_on_hpc/perturb_celltype.py
demos/run_on_hpc/pyproject.toml
demos/run_on_hpc/slurm_example.sh
demos/tutorials/INFERENCE.md
demos/tutorials/LORA_FINETUNING.md
demos/tutorials/lora_finetuning_tutorial.ipynb
pertTF.egg-info/PKG-INFO
pertTF.egg-info/SOURCES.txt
pertTF.egg-info/dependency_links.txt
pertTF.egg-info/requires.txt
pertTF.egg-info/top_level.txt
perttf/__init__.py
perttf/custom_loss.py
perttf/model/base_model.py
perttf/model/composition_change_analysis.py
perttf/model/config_gen.py
perttf/model/expr_sampler.py
perttf/model/hf.py
perttf/model/modules.py
perttf/model/pertTF.py
perttf/model/pert_emb.py
perttf/model/train_data_gen.py
perttf/model/train_function.py
perttf/utils/custom_tokenizer.py
perttf/utils/load_pretrain.py
perttf/utils/logger.py
perttf/utils/misc.py
perttf/utils/ot.py
perttf/utils/pert_data_loader.py
perttf/utils/plot.py
perttf/utils/preprocessor.py
perttf/utils/set_optimizer.py