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AUTHORS
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Gemfile
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Makefile
Pipfile
Pipfile.lock
README.md
_config.yml
context.jsonld
index.md
jekyll-theme-dinky.gemspec
meta.owl
meta.shex
meta.ttl
meta.yaml
metanc.shex
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
biolinkml/__init__.py
biolinkml/meta.py
biolinkml.egg-info/PKG-INFO
biolinkml.egg-info/SOURCES.txt
biolinkml.egg-info/dependency_links.txt
biolinkml.egg-info/entry_points.txt
biolinkml.egg-info/not-zip-safe
biolinkml.egg-info/pbr.json
biolinkml.egg-info/requires.txt
biolinkml.egg-info/top_level.txt
biolinkml/generators/README.md
biolinkml/generators/__init__.py
biolinkml/generators/csvgen.py
biolinkml/generators/dotgen.py
biolinkml/generators/golrgen.py
biolinkml/generators/graphqlgen.py
biolinkml/generators/jsonldcontextgen.py
biolinkml/generators/jsonldgen.py
biolinkml/generators/jsonschemagen.py
biolinkml/generators/markdowngen.py
biolinkml/generators/owlgen.py
biolinkml/generators/protogen.py
biolinkml/generators/pythongen.py
biolinkml/generators/rdfgen.py
biolinkml/generators/shexgen.py
biolinkml/generators/yumlgen.py
biolinkml/utils/__init__.py
biolinkml/utils/comparefiles.py
biolinkml/utils/formatutils.py
biolinkml/utils/generator.py
biolinkml/utils/mergeutils.py
biolinkml/utils/metamodelcore.py
biolinkml/utils/namespaces.py
biolinkml/utils/rawloader.py
biolinkml/utils/schemaloader.py
biolinkml/utils/schemasynopsis.py
biolinkml/utils/typereferences.py
biolinkml/utils/yamlutils.py
docs/ClassDefinition.md
docs/Definition.md
docs/Element.md
docs/Example.md
docs/Prefix.md
docs/SchemaDefinition.md
docs/SlotDefinition.md
docs/SubsetDefinition.md
docs/TypeDefinition.md
docs/abstract.md
docs/alias.md
docs/aliases.md
docs/apply_to.md
docs/base.md
docs/class_definition_apply_to.md
docs/class_definition_is_a.md
docs/class_definition_mixins.md
docs/class_uri.md
docs/classes.md
docs/comments.md
docs/default_curi_maps.md
docs/default_prefix.md
docs/default_range.md
docs/defining_slots.md
docs/deprecated.md
docs/description.md
docs/domain.md
docs/examples.md
docs/from_schema.md
docs/generation_date.md
docs/id.md
docs/id_prefixes.md
docs/identifier.md
docs/ifabsent.md
docs/imported_from.md
docs/imports.md
docs/in_subset.md
docs/index.md
docs/inherited.md
docs/inlined.md
docs/inverse.md
docs/is_a.md
docs/key.md
docs/license.md
docs/local_name.md
docs/local_names.md
docs/mappings.md
docs/metamodel_version.md
docs/mixin.md
docs/mixins.md
docs/multivalued.md
docs/name.md
docs/notes.md
docs/prefix_uri.md
docs/prefixes.md
docs/range.md
docs/range_subclass.md
docs/readonly.md
docs/repr.md
docs/required.md
docs/schema_definition_description.md
docs/see_also.md
docs/slot_definition_apply_to.md
docs/slot_definition_is_a.md
docs/slot_definition_mixins.md
docs/slot_definitions.md
docs/slot_uri.md
docs/slot_usage.md
docs/slots.md
docs/source_file.md
docs/source_file_date.md
docs/source_file_size.md
docs/subclass_of.md
docs/subsets.md
docs/title.md
docs/type_uri.md
docs/typeof.md
docs/types.md
docs/value.md
docs/value_description.md
docs/values_from.md
docs/version.md
docs/images/ClassDefinition.png
docs/images/Definition.png
docs/images/Element.png
docs/images/Example.png
docs/images/Prefix.png
docs/images/SchemaDefinition.png
docs/images/SlotDefinition.png
docs/images/SubsetDefinition.png
docs/images/TypeDefinition.png
docs/types/index.md
includes/__init__.py
includes/types.py
includes/types.yaml
notebooks/ShExPrimerModel.ipynb
tests/__init__.py
tests/test_context.py
tests/test_metamodel.py
tests/test_model_uris.py
tests/httpd/Dockerfile
tests/httpd/README.md
tests/httpd/__init__.py
tests/httpd/build.sh
tests/httpd/httpd-foreground
tests/httpd/httpd.conf
tests/httpd/start.sh
tests/httpd/biolink/.htaccess
tests/httpd/biolink/README.md
tests/httpd/biolink/biolinkml/.htaccess
tests/source/context.jsonld
tests/source/meta.yaml
tests/source/multi_id.py
tests/source/multi_id.yaml
tests/source/slots.yaml
tests/source/testtypes.py
tests/source/testtypes.yaml
tests/source/timepoint.yaml
tests/source/uri_tests.yaml
tests/source/includes/types.yaml
tests/target/meta.py
tests/target/metamodel.py
tests/target/multi_id.py
tests/target/testtypes.py
tests/target/timepoint.py
tests/target/types.py
tests/test_biolink_model/__init__.py
tests/test_biolink_model/model_loader.py
tests/test_biolink_model/test_biolink_metamodel.py
tests/test_biolink_model/test_model_loader.py
tests/test_biolink_model/biolink_metamodel/__init__.py
tests/test_biolink_model/biolink_metamodel/biolink_association.py
tests/test_biolink_model/biolink_metamodel/biolink_metamodel.py
tests/test_biolink_model/biolink_metamodel/biolink_model.py
tests/test_biolink_model/biolink_metamodel/biolink_named_thing.py
tests/test_biolink_model/biolink_metamodel/includes/__init__.py
tests/test_biolink_model/biolink_metamodel/includes/biolink_types.py
tests/test_biolink_model/biolink_metamodel/includes/types.py
tests/test_biolink_model/source/Pipfile
tests/test_biolink_model/source/biolink.yaml
tests/test_biolink_model/source/biolink_association.yaml
tests/test_biolink_model/source/biolink_metamodel.yaml
tests/test_biolink_model/source/biolink_model.yaml
tests/test_biolink_model/source/biolink_named_thing.yaml
tests/test_biolink_model/source/biolink_types.yaml
tests/test_biolink_model/source/includes/types.yaml
tests/test_notebooks/ShExPrimerModel.py
tests/test_notebooks/__init__.py
tests/test_rewrite_rules/__init__.py
tests/test_rewrite_rules/test_rewrite_rules.py
tests/test_scripts/README.md
tests/test_scripts/__init__.py
tests/test_scripts/clicktestcase.py
tests/test_scripts/test_gen_csv.py
tests/test_scripts/test_gen_golr.py
tests/test_scripts/test_gen_graphql.py
tests/test_scripts/test_gen_json_schema.py
tests/test_scripts/test_gen_jsonld.py
tests/test_scripts/test_gen_jsonld_context.py
tests/test_scripts/test_gen_markdown.py
tests/test_scripts/test_gen_owl.py
tests/test_scripts/test_gen_proto.py
tests/test_scripts/test_gen_python.py
tests/test_scripts/test_gen_rdf.py
tests/test_scripts/test_gen_shex.py
tests/test_scripts/test_gen_yuml.py
tests/test_scripts/testnm_gen_graphviz.py
tests/test_scripts/output/gencontext/generated
tests/test_scripts/output/gencontext/help
tests/test_scripts/output/gencontext/meta_context.jsonld
tests/test_scripts/output/gencontext/uri_tests.jsonld
tests/test_scripts/output/gencsv/generated
tests/test_scripts/output/gencsv/help
tests/test_scripts/output/gencsv/meta.csv
tests/test_scripts/output/gencsv/meta.tsv
tests/test_scripts/output/gencsv/meta_sd
tests/test_scripts/output/gencsv/meta_sd_sd
tests/test_scripts/output/gengolr/generated
tests/test_scripts/output/gengolr/help
tests/test_scripts/output/gengolr/meta/class_definition-config.yaml
tests/test_scripts/output/gengolr/meta/example-config.yaml
tests/test_scripts/output/gengolr/meta/generated
tests/test_scripts/output/gengolr/meta/prefix-config.yaml
tests/test_scripts/output/gengolr/meta/schema_definition-config.yaml
tests/test_scripts/output/gengolr/meta/slot_definition-config.yaml
tests/test_scripts/output/gengolr/meta/subset_definition-config.yaml
tests/test_scripts/output/gengolr/meta/type_definition-config.yaml
tests/test_scripts/output/gengraphql/generated
tests/test_scripts/output/gengraphql/help
tests/test_scripts/output/gengraphql/meta.graphql
tests/test_scripts/output/gengraphviz/generated
tests/test_scripts/output/gengraphviz/help
tests/test_scripts/output/gengraphviz/meta/all.png
tests/test_scripts/output/gengraphviz/meta/class_definition.png
tests/test_scripts/output/gengraphviz/meta/definition.png
tests/test_scripts/output/gengraphviz/meta/element.png
tests/test_scripts/output/gengraphviz/meta/example.png
tests/test_scripts/output/gengraphviz/meta/generated
tests/test_scripts/output/gengraphviz/meta/prefix.png
tests/test_scripts/output/gengraphviz/meta/schema_definition.png
tests/test_scripts/output/gengraphviz/meta/slot_definition.png
tests/test_scripts/output/gengraphviz/meta/subset_definition.png
tests/test_scripts/output/gengraphviz/meta/type_definition.png
tests/test_scripts/output/gengraphviz/meta1/all.svg
tests/test_scripts/output/gengraphviz/meta1/class_definition.svg
tests/test_scripts/output/gengraphviz/meta1/definition.svg
tests/test_scripts/output/gengraphviz/meta1/element.svg
tests/test_scripts/output/gengraphviz/meta1/example.svg
tests/test_scripts/output/gengraphviz/meta1/generated
tests/test_scripts/output/gengraphviz/meta1/prefix.svg
tests/test_scripts/output/gengraphviz/meta1/schema_definition.svg
tests/test_scripts/output/gengraphviz/meta1/slot_definition.svg
tests/test_scripts/output/gengraphviz/meta1/subset_definition.svg
tests/test_scripts/output/gengraphviz/meta1/type_definition.svg
tests/test_scripts/output/gengraphviz/meta2/definition.png
tests/test_scripts/output/gengraphviz/meta3/class_definition.png
tests/test_scripts/output/gengraphviz/meta3/element.png
tests/test_scripts/output/genjsonld/generated
tests/test_scripts/output/genjsonld/help
tests/test_scripts/output/genjsonld/meta.jsonld
tests/test_scripts/output/genjsonld/metacontext.jsonld
tests/test_scripts/output/genjsonschema/generated
tests/test_scripts/output/genjsonschema/help
tests/test_scripts/output/genjsonschema/meta.json
tests/test_scripts/output/genjsonschema/meta_inline.json
tests/test_scripts/output/genmarkdown/generated
tests/test_scripts/output/genmarkdown/help
tests/test_scripts/output/genmarkdown/issue2/Example.md
tests/test_scripts/output/genmarkdown/issue2/generated
tests/test_scripts/output/genmarkdown/issue2/index.md
tests/test_scripts/output/genmarkdown/issue2/value.md
tests/test_scripts/output/genmarkdown/issue2/value_description.md
tests/test_scripts/output/genmarkdown/issue2/images/Example.png
tests/test_scripts/output/genmarkdown/meta/ClassDefinition.md
tests/test_scripts/output/genmarkdown/meta/Definition.md
tests/test_scripts/output/genmarkdown/meta/Element.md
tests/test_scripts/output/genmarkdown/meta/Example.md
tests/test_scripts/output/genmarkdown/meta/Prefix.md
tests/test_scripts/output/genmarkdown/meta/SchemaDefinition.md
tests/test_scripts/output/genmarkdown/meta/SlotDefinition.md
tests/test_scripts/output/genmarkdown/meta/SubsetDefinition.md
tests/test_scripts/output/genmarkdown/meta/TypeDefinition.md
tests/test_scripts/output/genmarkdown/meta/abstract.md
tests/test_scripts/output/genmarkdown/meta/alias.md
tests/test_scripts/output/genmarkdown/meta/apply_to.md
tests/test_scripts/output/genmarkdown/meta/base.md
tests/test_scripts/output/genmarkdown/meta/class_definition_apply_to.md
tests/test_scripts/output/genmarkdown/meta/class_definition_is_a.md
tests/test_scripts/output/genmarkdown/meta/class_definition_mixins.md
tests/test_scripts/output/genmarkdown/meta/class_uri.md
tests/test_scripts/output/genmarkdown/meta/classes.md
tests/test_scripts/output/genmarkdown/meta/comments.md
tests/test_scripts/output/genmarkdown/meta/default_curi_maps.md
tests/test_scripts/output/genmarkdown/meta/default_prefix.md
tests/test_scripts/output/genmarkdown/meta/default_range.md
tests/test_scripts/output/genmarkdown/meta/defining_slots.md
tests/test_scripts/output/genmarkdown/meta/deprecated.md
tests/test_scripts/output/genmarkdown/meta/description.md
tests/test_scripts/output/genmarkdown/meta/domain.md
tests/test_scripts/output/genmarkdown/meta/examples.md
tests/test_scripts/output/genmarkdown/meta/from_schema.md
tests/test_scripts/output/genmarkdown/meta/generated
tests/test_scripts/output/genmarkdown/meta/generation_date.md
tests/test_scripts/output/genmarkdown/meta/id.md
tests/test_scripts/output/genmarkdown/meta/id_prefixes.md
tests/test_scripts/output/genmarkdown/meta/identifier.md
tests/test_scripts/output/genmarkdown/meta/ifabsent.md
tests/test_scripts/output/genmarkdown/meta/imports.md
tests/test_scripts/output/genmarkdown/meta/in_subset.md
tests/test_scripts/output/genmarkdown/meta/index.md
tests/test_scripts/output/genmarkdown/meta/inherited.md
tests/test_scripts/output/genmarkdown/meta/inlined.md
tests/test_scripts/output/genmarkdown/meta/inverse.md
tests/test_scripts/output/genmarkdown/meta/is_a.md
tests/test_scripts/output/genmarkdown/meta/key.md
tests/test_scripts/output/genmarkdown/meta/license.md
tests/test_scripts/output/genmarkdown/meta/local_name.md
tests/test_scripts/output/genmarkdown/meta/local_names.md
tests/test_scripts/output/genmarkdown/meta/metamodel_version.md
tests/test_scripts/output/genmarkdown/meta/mixin.md
tests/test_scripts/output/genmarkdown/meta/mixins.md
tests/test_scripts/output/genmarkdown/meta/multivalued.md
tests/test_scripts/output/genmarkdown/meta/name.md
tests/test_scripts/output/genmarkdown/meta/notes.md
tests/test_scripts/output/genmarkdown/meta/prefix_uri.md
tests/test_scripts/output/genmarkdown/meta/prefixes.md
tests/test_scripts/output/genmarkdown/meta/range.md
tests/test_scripts/output/genmarkdown/meta/range_subclass.md
tests/test_scripts/output/genmarkdown/meta/readonly.md
tests/test_scripts/output/genmarkdown/meta/required.md
tests/test_scripts/output/genmarkdown/meta/schema_definition_description.md
tests/test_scripts/output/genmarkdown/meta/see_also.md
tests/test_scripts/output/genmarkdown/meta/slot_definition_apply_to.md
tests/test_scripts/output/genmarkdown/meta/slot_definition_is_a.md
tests/test_scripts/output/genmarkdown/meta/slot_definition_mixins.md
tests/test_scripts/output/genmarkdown/meta/slot_definitions.md
tests/test_scripts/output/genmarkdown/meta/slot_uri.md
tests/test_scripts/output/genmarkdown/meta/slot_usage.md
tests/test_scripts/output/genmarkdown/meta/slots.md
tests/test_scripts/output/genmarkdown/meta/source_file.md
tests/test_scripts/output/genmarkdown/meta/source_file_date.md
tests/test_scripts/output/genmarkdown/meta/source_file_size.md
tests/test_scripts/output/genmarkdown/meta/subclass_of.md
tests/test_scripts/output/genmarkdown/meta/subsets.md
tests/test_scripts/output/genmarkdown/meta/title.md
tests/test_scripts/output/genmarkdown/meta/type_uri.md
tests/test_scripts/output/genmarkdown/meta/typeof.md
tests/test_scripts/output/genmarkdown/meta/types.md
tests/test_scripts/output/genmarkdown/meta/value.md
tests/test_scripts/output/genmarkdown/meta/value_description.md
tests/test_scripts/output/genmarkdown/meta/values_from.md
tests/test_scripts/output/genmarkdown/meta/version.md
tests/test_scripts/output/genowl/generated
tests/test_scripts/output/genowl/help
tests/test_scripts/output/genowl/meta_owl.jsonld
tests/test_scripts/output/genowl/meta_owl.n3
tests/test_scripts/output/genowl/meta_owl.ttl
tests/test_scripts/output/genproto/generated
tests/test_scripts/output/genproto/help
tests/test_scripts/output/genproto/meta.proto
tests/test_scripts/output/genpython/generated
tests/test_scripts/output/genpython/help
tests/test_scripts/output/genrdf/generated
tests/test_scripts/output/genrdf/help
tests/test_scripts/output/genrdf/make_output.ttl
tests/test_scripts/output/genrdf/meta.n3
tests/test_scripts/output/genrdf/meta.ttl
tests/test_scripts/output/genshex/generated
tests/test_scripts/output/genshex/help
tests/test_scripts/output/genshex/metashex.json
tests/test_scripts/output/genshex/metashex.shex
tests/test_scripts/output/genshex/metashex.ttl
tests/test_scripts/output/genshex/metashexnc.json
tests/test_scripts/output/genshex/metashexnc.shex
tests/test_scripts/output/genshex/metashexnc.ttl
tests/test_scripts/output/genyuml/definition.yuml
tests/test_scripts/output/genyuml/definition_element.yuml
tests/test_scripts/output/genyuml/generated
tests/test_scripts/output/genyuml/help
tests/test_scripts/output/genyuml/meta.yuml
tests/test_scripts/output/genyuml/meta/SchemaDefinition.png
tests/test_scripts/output/genyuml/meta/generated
tests/test_scripts/output/genyuml/meta1/Definition.png
tests/test_scripts/output/genyuml/meta1/generated
tests/test_scripts/output/genyuml/meta2/Element.png
tests/test_scripts/output/genyuml/meta2/generated
tests/test_scripts/output/genyuml/meta_jpg/SchemaDefinition.jpg
tests/test_scripts/output/genyuml/meta_jpg/generated
tests/test_scripts/output/genyuml/meta_json/SchemaDefinition.json
tests/test_scripts/output/genyuml/meta_json/generated
tests/test_scripts/output/genyuml/meta_pdf/SchemaDefinition.pdf
tests/test_scripts/output/genyuml/meta_pdf/generated
tests/test_scripts/output/genyuml/meta_png/SchemaDefinition.png
tests/test_scripts/output/genyuml/meta_png/generated
tests/test_scripts/output/genyuml/meta_svg/SchemaDefinition.svg
tests/test_scripts/output/genyuml/meta_svg/generated
tests/test_utils/__init__.py
tests/test_utils/test_formatutils.py
tests/test_utils/test_generator.py
tests/test_utils/test_load_raw_schema.py
tests/test_utils/test_metamodelcore.py
tests/test_utils/test_namespaces.py
tests/test_utils/test_resolver.py
tests/test_utils/test_schemaloader.py
tests/test_utils/test_schemasynopsis.py
tests/test_utils/test_yaml_utils.py
tests/test_utils/data/base.errs
tests/test_utils/data/base.synopsis
tests/test_utils/data/base.yaml
tests/test_utils/data/generator1.yaml
tests/test_utils/data/loadererror1.yaml
tests/test_utils/data/loadererror10.yaml
tests/test_utils/data/loadererror2.yaml
tests/test_utils/data/loadererror3.yaml
tests/test_utils/data/loadererror4.yaml
tests/test_utils/data/loadererror5.yaml
tests/test_utils/data/loadererror6.yaml
tests/test_utils/data/loadererror7.yaml
tests/test_utils/data/loadererror8.yaml
tests/test_utils/data/loadererror9.yaml
tests/test_utils/data/loaderpass11.yaml
tests/test_utils/data/loadertest1.yaml
tests/test_utils/data/merge1.errs
tests/test_utils/data/merge1.json
tests/test_utils/data/merge1.yaml
tests/test_utils/data/mergeerror1.yaml
tests/test_utils/data/meta.errs
tests/test_utils/data/meta.json
tests/test_utils/data/meta.synopsis
tests/test_utils/data/meta.yaml
tests/test_utils/data/ownalltest.yaml
tests/test_utils/data/resolver1.yaml
tests/test_utils/data/resolver2.yaml
tests/test_utils/data/resolver3.yaml
tests/test_utils/data/schema1.yaml
tests/test_utils/data/schema2.yaml
tests/test_utils/data/schema3.yaml
tests/test_utils/data/schema4.yaml
tests/test_utils/data/schema5.yaml
tests/test_utils/data/schema6.yaml
tests/test_utils/data/synopsis1.yaml
tests/test_utils/data/synopsis2.errs
tests/test_utils/data/synopsis2.synopsis
tests/test_utils/data/synopsis2.yaml
tests/test_utils/data/typeerror1.yaml
tests/test_utils/data/typeerror2.yaml
tests/test_utils/data/typeerror3.yaml
tests/test_utils/data/typeerror4.yaml
tests/test_utils/data/types.json
tests/test_utils/data/yaml1.yaml
tests/test_utils/data/yaml2.yaml
tests/test_utils/data/includes/types.errs
tests/test_utils/data/includes/types.json
tests/test_utils/data/includes/types.yaml
tests/test_utils/support/__init__.py
tests/test_utils/support/base.py
tests/utils/__init__.py
tests/utils/compare_directories.py
tests/utils/dirutils.py