CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
boltz2_client/__init__.py
boltz2_client/__main__.py
boltz2_client/a3m_to_csv_converter.py
boltz2_client/client.py
boltz2_client/exceptions.py
boltz2_client/models.py
boltz2_client/msa_search.py
boltz2_client/multi_endpoint_client.py
boltz2_client/utils.py
boltz2_client/virtual_screening.py
boltz2_client/a3m/__init__.py
boltz2_client/a3m/converter.py
boltz2_client/a3m/pairing.py
boltz2_client/a3m/parser.py
boltz2_client/cli/__init__.py
boltz2_client/cli/info.py
boltz2_client/cli/msa.py
boltz2_client/cli/predict.py
boltz2_client/cli/screen.py
boltz2_client/data/__init__.py
boltz2_client/data/speclist.txt
boltz2_python_client.egg-info/PKG-INFO
boltz2_python_client.egg-info/SOURCES.txt
boltz2_python_client.egg-info/dependency_links.txt
boltz2_python_client.egg-info/entry_points.txt
boltz2_python_client.egg-info/requires.txt
boltz2_python_client.egg-info/top_level.txt
docs/a3m_to_multimer_msa.md
docs/affinity_prediction.md
docs/async.md
docs/covalent_complex.md
docs/msa_search.md
docs/multi_endpoint.md
docs/parameters.md
docs/virtual_screening.md
docs/yaml.md
examples/01_basic_protein_folding.py
examples/02_protein_structure_prediction_with_msa.py
examples/03_protein_ligand_complex.py
examples/04_covalent_bonding.py
examples/05_dna_protein_complex.py
examples/06_yaml_configurations.py
examples/07_advanced_parameters.py
examples/08_affinity_prediction_simple.py
examples/09_virtual_screening.py
examples/10_msa_search_integration.py
examples/11_msa_search_large_protein.py
examples/12_msa_affinity_prediction.py
examples/13_a3m_to_multimer_csv.py
examples/README.md
examples/barnase_barstar_with_msa.py
examples/cdk4_msa_affinity_example.py
examples/comprehensive_multi_endpoint_demo.py
examples/msa_search_simple_demo.py
examples/multi_endpoint_screening.py
examples/data/cdk2_target.txt
examples/data/kinase_y7w_affinity.json
examples/data/msa-kras-g12c_combined.a3m
examples/data/multi_protein_complex.yaml
examples/data/protein_ligand.yaml
examples/data/sars_cov2_mpro_nirmatrelvir.yaml
examples/data/test_msa_endpoint_curl.sh
examples/data/cdk4_msa_affinity/cdk4_palbociclib_results.json
examples/notebooks/01_multimer_prediction.ipynb
examples/notebooks/02_cdk4_msa_affinity_prediction.ipynb
examples/notebooks/03_colabfold_a3m_to_multimer.ipynb
examples/notebooks/boltz2_comprehensive_demo.ipynb
examples/notebooks/boltz2_demo.ipynb
examples/notebooks/boltz2_nim_DNA_Protein_Complex_example_py3Dmol.ipynb
examples/notebooks/boltz2_nim_protein_ligand_covalent_complex_molstar_visualization.ipynb
licenses/PyYAML-LICENSE
licenses/README.md
licenses/aiofiles-LICENSE
licenses/aiohttp-LICENSE
licenses/click-LICENSE
licenses/httpx-LICENSE
licenses/py3Dmol-LICENSE
licenses/pydantic-LICENSE
licenses/rich-LICENSE
licenses/typing-extensions-LICENSE
tests/__init__.py
tests/conftest.py
tests/constants.py
tests/test_a3m_to_csv_converter.py
tests/test_basic.py
tests/test_cli_multi_endpoint.py
tests/test_comprehensive_stress.py
tests/test_examples_syntax.py
tests/test_integration_scenarios.py
tests/test_live_endpoints.py
tests/test_msa_search.py
tests/test_multi_endpoint_functionality.py