Metadata-Version: 2.4
Name: VisualQC
Version: 0.6.7
Summary: Assistive tool for the quality control of neuroimaging data
Project-URL: Homepage, https://github.com/raamana/visualqc
Author-email: Pradeep Reddy Raamana <raamana@gmail.com>
License-Expression: Apache-2.0
License-File: AUTHORS.rst
License-File: LICENSE
Keywords: visualqc
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Requires-Python: >=3.7
Requires-Dist: matplotlib>=2.1.1
Requires-Dist: mrivis
Requires-Dist: nibabel
Requires-Dist: numpy
Requires-Dist: packaging
Requires-Dist: pybids
Requires-Dist: scikit-learn
Requires-Dist: scipy
Description-Content-Type: text/x-rst



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        :target: https://pypi.python.org/pypi/visualqc

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==========================================================================================
VisualQC : software development kit for medical and neuroimaging quality control
==========================================================================================

.. image:: docs/vqc_logo_small.png



.. image:: docs/visualqc_poster_comprehensive.png


Links
-------

* Software Documentation: https://raamana.github.io/visualqc
* `User Manual </docs/VisualQC_TrainingManual_v1p4.pdf>`_
* Free software: Apache 2.0 license
* Pure python package (no licensing issues ala matlab, easy to install and update requiring no other external installations or maintenance)
* Generic design for API that can be adapted for other domains, imaging or medical or otherwise.


Galleries
----------

* NEW: `Defacing QC <https://raamana.github.io/visualqc/gallery_defacing.html>`_
* `Freesurfer <https://raamana.github.io/visualqc/gallery_freesurfer.html>`_
* `Functional MRI <https://raamana.github.io/visualqc/gallery_functional_mri.html>`_
* `Registration/Alignment quality <https://raamana.github.io/visualqc/gallery_registration_unimodal.html>`_
* `Structural T1w MRI <https://raamana.github.io/visualqc/gallery_t1_mri.html>`_
* `Volumetric Segmentation <https://raamana.github.io/visualqc/gallery_segmentation_volumetric.html>`_


Citation
--------------

If you used ``VisualQC`` in your analyses or projects, whether or not it was reported in the main paper, please consider citing the paper below:

- Pradeep Reddy Raamana (2023), “VisualQC: Software Development Kit for Medical and Neuroimaging Quality Control and Assurance.” Aperture Neuro 3 (March): 1–4. https://doi.org/10.52294/e130fcd2-ce83-4222-856d-c82022013a50

Bibtex:

.. code-block:: tex

    @article{Raamana_2022_VisualQCSoftware,
    	journal={Aperture Neuro},
    	doi={10.52294/e130fcd2-ce83-4222-856d-c82022013a50},
    	publisher={Organization for Human Brain Mapping},
    	title={VisualQC: software development kit for medical and neuroimaging quality control and assurance},
    	volume=3,
    	author={Reddy Raamana, Pradeep},
    	pages={1--4},
    	date={2023-03-02},
    	year=2023,
    	month=3,
    	day=2,
    }

More details at `<docs/citation.rst>`_

Contributions
--------------

`Contributions are welcome. <CONTRIBUTING.rst>`_

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