What each plasmid is comes from a simulated digest, never from its file name or annotations.
Amber rows need a human: a conflict between the digest and the annotations, an internal site, or nothing the digest could call.
Click the type pill on any row to assign a type by hand. Manual assignments are stored in ggasm/overrides/, one file per plasmid, and always beat detection. They are shared with your lab alongside the plasmid itself.
Duplicate files are merged. One sequence is one plasmid, and every filename it was found under is listed beneath its name.
The Component column reads the annotations inside the fragment that plasmid contributes — the part itself, not its vector.
Re-scan after adding files. Only changed files are re-read, so it is near-instant.
| File |
Plasmid |
Type |
Overhangs |
Internal sites |
Evidence |
Component |
ng/µL |
Notes |
| indexing… |