$ rnftools dwgsim2rnf -h

usage: rnftools dwgsim2rnf [-h] [-p str] [-e] -o file -x file [-g int] [-u]

Convert a DwgSim FASTQ file (dwgsim_prefix.bfast.fastq) to RNF-FASTQ.

optional arguments:
  -h, --help            show this help message and exit
  -p str, --dwgsim-prefix str
                        Prefix for DwgSim.
  -e, --estimate-unknown
                        Estimate unknown values.
  -o file, --rnf-fastq file
                        Output FASTQ file (- for standard output).
  -x file, --faidx file
                        FAI index of the reference FASTA file (- for standard
                        input). It can be created using 'samtools faidx'.
  -g int, --genome-id int
                        Genome ID in RNF (default: 1).
  -u, --allow-unmapped  Allow unmapped reads.
