Metadata-Version: 2.4
Name: FlowCal
Version: 1.3.1
Summary: Flow Cytometry Calibration Library
Home-page: https://github.com/taborlab/FlowCal
Author: Sebastian Castillo-Hair
Author-email: castillohair@gmail.com
License: MIT
Keywords: flow cytometry
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
License-File: license.txt
Requires-Dist: packaging>=16.8
Requires-Dist: six>=1.10.0
Requires-Dist: numpy>=1.9.0
Requires-Dist: scipy>=0.19.0
Requires-Dist: matplotlib>=2.0.0
Requires-Dist: scikit-image>=0.10.0
Requires-Dist: scikit-learn>=0.16.0
Requires-Dist: pandas>=0.23.0
Requires-Dist: xlrd<2.0.0,>=0.9.2
Requires-Dist: openpyxl>=2.2.0
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===========

``FlowCal``

===========

``FlowCal`` is a library for processing and analyzing flow cytometry data in Python.

It features:



* Extraction of Flow Cytometry Standard (FCS) files into numpy array-like structures

* Traditional and non-standard gating, including automatic density-based two-dimensional gating.

* Traditional transformation functions, such as exponentiation.

* Analysis of calibration beads data, standard curve generation, and transformation to absolute units (Molecules of Equivalent Fluorophore, MEF).

* Plotting, including generation of histograms, density plots and scatter plots.

* A user-fiendly Excel UI to gate, transform, plot, and generate statistics from a list of flow cytometry samples in a simple fashion.



Documentation

=============

The official documentation can be found in https://flowcal.readthedocs.io. Here you will find installation instructions, tutorials, and more.



Report Bugs

===========

The official way to report a bug is through the issue tracker on github (https://github.com/taborlab/FlowCal/issues). Try to be as explicit as possible when describing your issue. Ideally, a set of instructions to reproduce the error should be provided, together with the version of all the relevant packages you are using.



Request Features

================

Features can also be requested through the issue tracker on github. Try to be as descriptive as possible about the desired feature.
