mkdir $(date '+%Y%m%d')_entrega01
cd $(date '+%Y%m%d')_entrega01

#Create symbolic links depending on the analysis
#Individual files
ln -s ../../ANALYSIS/*_MET/99-stats/multiqc_report.html ./krona_results.html
ln -s ../../ANALYSIS/*FLU_IRMA/04-irma/all_samples_completo.txt .
ln -s ../../ANALYSIS/*FLU_IRMA/04-irma/A_H* .
ln -s ../../ANALYSIS/*FLU_IRMA/04-irma/B .
ln -s ../../ANALYSIS/*FLU_IRMA/04-irma/C .
tail -n +2 ../../ANALYSIS/*_FLU_IRMA/04-irma/clean_irma_stats.txt | cut -f4 | sort | uniq -c > flu_type_summary.txt