LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
MUS/BWTTags.py
MUS/BackendContract.py
MUS/Benchmarking.py
MUS/CommandLineInterface.py
MUS/LCP.py
MUS/MSBWTGen.py
MUS/MultiSourceProvenance.py
MUS/MultiSourceQuery.py
MUS/MultiStringBWT.py
MUS/QualitySidecar.py
MUS/ReadProvenance.py
MUS/SourceIndex.py
MUS/SourceMetadata.py
MUS/SourceRemoval.py
MUS/TranscriptBuilder.py
MUS/__init__.py
MUS/util.py
MUSCython/AlignmentUtil.pyx
MUSCython/BasicBWT.pxd
MUSCython/BasicBWT.pyx
MUSCython/ByteBWTCython.pyx
MUSCython/CompressToRLE.pyx
MUSCython/GenericMerge.pyx
MUSCython/LZW_BWTCython.pyx
MUSCython/MSBWTCompGenCython.pyx
MUSCython/MSBWTGenCython.pyx
MUSCython/MultiStringBWTCython.pyx
MUSCython/MultimergeCython.pyx
MUSCython/RLE_BWTCython.pyx
MUSCython/__init__.py
pymsbwt.egg-info/PKG-INFO
pymsbwt.egg-info/SOURCES.txt
pymsbwt.egg-info/dependency_links.txt
pymsbwt.egg-info/entry_points.txt
pymsbwt.egg-info/not-zip-safe
pymsbwt.egg-info/requires.txt
pymsbwt.egg-info/top_level.txt
tools/__init__.py
tools/benchmark_index.py
tools/bwt_tags.py
tools/lcp.py
tools/quality_sidecar.py
tools/remove_sources.py
tools/retrofit_read_provenance.py