CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/consensuscnv/__init__.py
src/consensuscnv/__main__.py
src/consensuscnv/cli.py
src/consensuscnv/consensus.py
src/consensuscnv/evaluation.py
src/consensuscnv/genome.py
src/consensuscnv/output_layout.py
src/consensuscnv/utils.py
src/consensuscnv.egg-info/PKG-INFO
src/consensuscnv.egg-info/SOURCES.txt
src/consensuscnv.egg-info/dependency_links.txt
src/consensuscnv.egg-info/entry_points.txt
src/consensuscnv.egg-info/requires.txt
src/consensuscnv.egg-info/top_level.txt
src/consensuscnv/callsets/__init__.py
src/consensuscnv/callsets/bed_io.py
src/consensuscnv/callsets/calls.py
src/consensuscnv/callsets/callset.py
src/consensuscnv/callsets/edges.py
src/consensuscnv/callsets/merging.py
src/consensuscnv/callsets/registry.py
src/consensuscnv/classification/__init__.py
src/consensuscnv/classification/classify.py
src/consensuscnv/classification/intervals.py
src/consensuscnv/classification/labels.py
src/consensuscnv/classification/pairs.py
src/consensuscnv/parsing/__init__.py
src/consensuscnv/parsing/benchmark_parser.py
src/consensuscnv/parsing/download.py
src/consensuscnv/parsing/exclusion_report.py
src/consensuscnv/parsing/parser_utils.py
src/consensuscnv/parsing/parsing_driver.py
src/consensuscnv/parsing/penncnv_parser.py
src/consensuscnv/parsing/vcf_parser.py
src/consensuscnv/templates/config.full.yaml
src/consensuscnv/templates/config.yaml
src/consensuscnv/templates/excluded_regions_hg38.bed
src/consensuscnv/templates/genome_autosome_hg38.txt
src/consensuscnv/templates/genome_primary_hg38.txt
src/consensuscnv/templates/included_regions_hg38.bed
tests/conftest.py
tests/test_bed_io.py
tests/test_cli.py
tests/test_intervals.py
tests/test_merging.py
tests/test_partition.py
tests/test_registry.py