AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
MSCI/__init__.py
MSCI/cli.py
MSCI.egg-info/PKG-INFO
MSCI.egg-info/SOURCES.txt
MSCI.egg-info/dependency_links.txt
MSCI.egg-info/not-zip-safe
MSCI.egg-info/requires.txt
MSCI.egg-info/top_level.txt
MSCI/Grouping_MS1/Grouping_mw_irt.py
MSCI/Grouping_MS1/__init__.py
MSCI/Preprocessing/Koina.py
MSCI/Preprocessing/Parsing.py
MSCI/Preprocessing/__init__.py
MSCI/Preprocessing/create_hla.py
MSCI/Preprocessing/filter_spectra.py
MSCI/Preprocessing/read_msp_file.py
MSCI/Preprocessing/read_mzml.py
MSCI/Similarity/__init__.py
MSCI/Similarity/spectral_angle_similarity.py
MSCI/data/__init__.py
MSCI/data/digest.py
MSCI/gui/__init__.py
MSCI/gui/landing_page.py
MSCI/gui/main.py
MSCI/gui/peptide_analysis.py
MSCI/gui/peptide_checker.py
MSCI/gui/utils.py
MSCI/mutation/__init__.py
MSCI/mutation/mutated_sequences.py
MSCI/visualization/__init__.py
MSCI/visualization/plots.py
docs/API.rst
docs/INTRODUCTION.png
docs/MSCA.png
docs/MSCI_logo.png
docs/MSCI_logor.png
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
docs/_static/MSCI_logo-rem.png
docs/_static/MSCI_logo.png
tests/__init__.py
tests/test_grouping.py
tests/test_gui.py
tests/test_msci.py
tests/test_mutation.py
tests/test_preprocessing_create_hla.py
tests/test_preprocessing_koina.py
tests/test_preprocessing_parsing.py
tests/test_similarity.py