.gitignore
LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
.github/workflows/python-publish.yml
.github/workflows/release.yml
archive/search_hmm.py
example/Nipponbare.fa.fai
example/PF00010.hmm
example/chr1.36545388.snp.vcf
src/biohelpers/__init__.py
src/biohelpers/_version.py
src/biohelpers/download_hmm.py
src/biohelpers/get_fq_file_from_ena.py
src/biohelpers/get_fq_meta_from_ena.py
src/biohelpers/get_hap.py
src/biohelpers/parse_longest_mrna.py
src/biohelpers/process_blast_result.py
src/biohelpers/run_hisat2.py
src/biohelpers.egg-info/PKG-INFO
src/biohelpers.egg-info/SOURCES.txt
src/biohelpers.egg-info/dependency_links.txt
src/biohelpers.egg-info/entry_points.txt
src/biohelpers.egg-info/requires.txt
src/biohelpers.egg-info/top_level.txt
src/biohelpers/__pycache__/__init__.cpython-311.pyc
src/biohelpers/__pycache__/__init__.cpython-313.pyc
src/biohelpers/__pycache__/download_hmm.cpython-313.pyc
src/biohelpers/__pycache__/get_fq_file_from_ena.cpython-313.pyc
src/biohelpers/__pycache__/get_fq_meta_from_ena.cpython-313.pyc
src/biohelpers/__pycache__/get_hap.cpython-311.pyc
src/biohelpers/__pycache__/parse_longest_mrna.cpython-311.pyc
src/biohelpers/__pycache__/parse_longest_mrna.cpython-313.pyc
src/biohelpers/__pycache__/process_blast_result.cpython-313.pyc
src/biohelpers/__pycache__/search_hmm.cpython-313.pyc
test/PF00010.hmm
test/longest.pep.fa